miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 5' -57.8 NC_006151.1 + 2588 0.67 0.752887
Target:  5'- aCGcGCUGGCgguagGCGcGCGGCGGCa- -3'
miRNA:   3'- aGCaCGACCGga---UGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 3792 0.66 0.762522
Target:  5'- -gGUGCUGGagcuggaCUugGUGCuGgAGCUg -3'
miRNA:   3'- agCACGACCg------GAugCACGuCgUCGAg -5'
29409 5' -57.8 NC_006151.1 + 39468 0.69 0.590311
Target:  5'- cCGUgcGCUGGCCcGgGUGCcGCgAGCUCc -3'
miRNA:   3'- aGCA--CGACCGGaUgCACGuCG-UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 49261 0.67 0.723369
Target:  5'- cUCGUGC-GcGCCguCGUcCAGCGGCUCu -3'
miRNA:   3'- -AGCACGaC-CGGauGCAcGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 50666 0.66 0.781431
Target:  5'- gUCGUGCgcGGCCgcacccccGCGccgccGCGGCAGCg- -3'
miRNA:   3'- -AGCACGa-CCGGa-------UGCa----CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 54289 0.66 0.812287
Target:  5'- -gGUGCgcuccaccgaGGCCgcCGUGCGGCAgauccaguccacgcuGCUCa -3'
miRNA:   3'- agCACGa---------CCGGauGCACGUCGU---------------CGAG- -5'
29409 5' -57.8 NC_006151.1 + 54705 0.66 0.789766
Target:  5'- gCGUGCUgggccagGGCCUggACGagGUGGCcgAGCUCg -3'
miRNA:   3'- aGCACGA-------CCGGA--UGCa-CGUCG--UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 57505 0.68 0.693134
Target:  5'- aCGcGCUcGGCCgcgGCG-GCGGCGGC-Cg -3'
miRNA:   3'- aGCaCGA-CCGGa--UGCaCGUCGUCGaG- -5'
29409 5' -57.8 NC_006151.1 + 59731 0.73 0.41641
Target:  5'- aCGggGUUGGCgaGCGcgcGCAGCAGCUCc -3'
miRNA:   3'- aGCa-CGACCGgaUGCa--CGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 60017 0.67 0.703277
Target:  5'- gUCGUugacGCUcGUCaGCGUGCAGC-GCUCg -3'
miRNA:   3'- -AGCA----CGAcCGGaUGCACGUCGuCGAG- -5'
29409 5' -57.8 NC_006151.1 + 62245 0.77 0.223148
Target:  5'- gUCGUGUccGG-CUACGUGCAGguGCUCc -3'
miRNA:   3'- -AGCACGa-CCgGAUGCACGUCguCGAG- -5'
29409 5' -57.8 NC_006151.1 + 64321 0.7 0.559713
Target:  5'- cCGUGCUGGCCUcgcaccACGU-CGGCGGg-- -3'
miRNA:   3'- aGCACGACCGGA------UGCAcGUCGUCgag -5'
29409 5' -57.8 NC_006151.1 + 67793 0.71 0.519655
Target:  5'- aCGUGCUccacgcGGCaCUcGCG-GCAGCAGCUg -3'
miRNA:   3'- aGCACGA------CCG-GA-UGCaCGUCGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 69700 0.68 0.693134
Target:  5'- gUCGaUGgUGGCCgccgcCGgggGCAGCAGCg- -3'
miRNA:   3'- -AGC-ACgACCGGau---GCa--CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 71761 0.7 0.559713
Target:  5'- cCGcGCgUGGuCCUGCG-GCAGCGGCg- -3'
miRNA:   3'- aGCaCG-ACC-GGAUGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 72095 0.67 0.713358
Target:  5'- ---cGCgGGCCUggGCGaGCGGCAGCgUCa -3'
miRNA:   3'- agcaCGaCCGGA--UGCaCGUCGUCG-AG- -5'
29409 5' -57.8 NC_006151.1 + 72719 0.67 0.713358
Target:  5'- -aGUGCUccucGGCCccgagggGCGUccGCAGCAGCg- -3'
miRNA:   3'- agCACGA----CCGGa------UGCA--CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 81594 0.69 0.610876
Target:  5'- gCGUcGCcggGGCCgccgGCGcGCAGCAGCa- -3'
miRNA:   3'- aGCA-CGa--CCGGa---UGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 85127 0.67 0.710341
Target:  5'- cCGcGCUGuGCCUgcaccuggugcaccGCGUGCGGCAGg-- -3'
miRNA:   3'- aGCaCGAC-CGGA--------------UGCACGUCGUCgag -5'
29409 5' -57.8 NC_006151.1 + 85933 0.69 0.631505
Target:  5'- ---gGCUgGGCCUGCugcUGCAGCAGC-Cg -3'
miRNA:   3'- agcaCGA-CCGGAUGc--ACGUCGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.