miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 5' -57.8 NC_006151.1 + 91597 0.66 0.77204
Target:  5'- cUCGUcGCUGagcaccagcauGCCggUGCGcUGCAGgGGCUCg -3'
miRNA:   3'- -AGCA-CGAC-----------CGG--AUGC-ACGUCgUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 95921 0.67 0.703277
Target:  5'- gCGUGCagucGCCcgaggGCGUGCGGUugaAGCUCu -3'
miRNA:   3'- aGCACGac--CGGa----UGCACGUCG---UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 103278 0.74 0.341892
Target:  5'- aCGUGCUGaGCCaggagACGcGCGcGCGGCUCg -3'
miRNA:   3'- aGCACGAC-CGGa----UGCaCGU-CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 103539 0.67 0.723369
Target:  5'- gCGcGCUGGUggGCGccggGCAGCcGCUCg -3'
miRNA:   3'- aGCaCGACCGgaUGCa---CGUCGuCGAG- -5'
29409 5' -57.8 NC_006151.1 + 104275 0.66 0.799795
Target:  5'- gCGgcgGCgGGCCcgccgcugcagGCGcUGCAGCGGCUg -3'
miRNA:   3'- aGCa--CGaCCGGa----------UGC-ACGUCGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 104411 0.67 0.733301
Target:  5'- gCGUGCUGGCCcGCGccGCcGcCGGCa- -3'
miRNA:   3'- aGCACGACCGGaUGCa-CGuC-GUCGag -5'
29409 5' -57.8 NC_006151.1 + 104585 0.68 0.662432
Target:  5'- aCGUGCUgcaGGCCgGCG-GCAGCcGCg- -3'
miRNA:   3'- aGCACGA---CCGGaUGCaCGUCGuCGag -5'
29409 5' -57.8 NC_006151.1 + 104648 0.66 0.762522
Target:  5'- aCGUGCgcgcGGCCgccgACGcgGCGcGCGcGCUCg -3'
miRNA:   3'- aGCACGa---CCGGa---UGCa-CGU-CGU-CGAG- -5'
29409 5' -57.8 NC_006151.1 + 105082 0.67 0.752887
Target:  5'- aCGUGCaGGCCgucgagugGC-UGCAccaggcGCGGCUCa -3'
miRNA:   3'- aGCACGaCCGGa-------UGcACGU------CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 106545 0.7 0.528577
Target:  5'- cCGUGCUGGCgCgcAUGUGCAuccccccGCGGCUg -3'
miRNA:   3'- aGCACGACCG-Ga-UGCACGU-------CGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 112841 0.71 0.509812
Target:  5'- gCGUGCUcacGCUcguggACGUGCAGCGGCa- -3'
miRNA:   3'- aGCACGAc--CGGa----UGCACGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 113333 0.71 0.490367
Target:  5'- cCGUGCUGGCgCUggcgcugaagcACGUGC-GCGGC-Cg -3'
miRNA:   3'- aGCACGACCG-GA-----------UGCACGuCGUCGaG- -5'
29409 5' -57.8 NC_006151.1 + 114112 0.67 0.751917
Target:  5'- cUCGgcgGCUGcuGCCccACGUGCGccgccgccgagccGCGGCUCg -3'
miRNA:   3'- -AGCa--CGAC--CGGa-UGCACGU-------------CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 114178 1.1 0.001222
Target:  5'- cUCGUGCUGGCCUACGUGCAGCAGCUCa -3'
miRNA:   3'- -AGCACGACCGGAUGCACGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 114314 0.69 0.621187
Target:  5'- aCGUGCUgcgcgacgggGGCCUgcgcgACGUGC-GCGuGCUCu -3'
miRNA:   3'- aGCACGA----------CCGGA-----UGCACGuCGU-CGAG- -5'
29409 5' -57.8 NC_006151.1 + 120105 0.66 0.77204
Target:  5'- -gGUGCUGcGCCgccGCGUGguGgAcauGCUCa -3'
miRNA:   3'- agCACGAC-CGGa--UGCACguCgU---CGAG- -5'
29409 5' -57.8 NC_006151.1 + 120757 0.68 0.68294
Target:  5'- gCGUcaUGGCCUGgGUGCGGCGcccGCUg -3'
miRNA:   3'- aGCAcgACCGGAUgCACGUCGU---CGAg -5'
29409 5' -57.8 NC_006151.1 + 121044 0.72 0.452566
Target:  5'- uUUGUGCUGGCCUgcccgcGCGUG-GGCuucacguGCUCg -3'
miRNA:   3'- -AGCACGACCGGA------UGCACgUCGu------CGAG- -5'
29409 5' -57.8 NC_006151.1 + 121681 0.67 0.750946
Target:  5'- gCGaGCgGGCCgacccggccaugGCGgaGCGGCGGCUCg -3'
miRNA:   3'- aGCaCGaCCGGa-----------UGCa-CGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 127965 0.68 0.662432
Target:  5'- cUCG-GCgaaggGGUCcacguacuCGUGCGGCGGCUCc -3'
miRNA:   3'- -AGCaCGa----CCGGau------GCACGUCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.