Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 5' | -57.8 | NC_006151.1 | + | 131941 | 0.68 | 0.68294 |
Target: 5'- cCGUaGCUGGCCacggGCGagggcggGCGGCAGUa- -3' miRNA: 3'- aGCA-CGACCGGa---UGCa------CGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 127965 | 0.68 | 0.662432 |
Target: 5'- cUCG-GCgaaggGGUCcacguacuCGUGCGGCGGCUCc -3' miRNA: 3'- -AGCaCGa----CCGGau------GCACGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 121681 | 0.67 | 0.750946 |
Target: 5'- gCGaGCgGGCCgacccggccaugGCGgaGCGGCGGCUCg -3' miRNA: 3'- aGCaCGaCCGGa-----------UGCa-CGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 121044 | 0.72 | 0.452566 |
Target: 5'- uUUGUGCUGGCCUgcccgcGCGUG-GGCuucacguGCUCg -3' miRNA: 3'- -AGCACGACCGGA------UGCACgUCGu------CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 120757 | 0.68 | 0.68294 |
Target: 5'- gCGUcaUGGCCUGgGUGCGGCGcccGCUg -3' miRNA: 3'- aGCAcgACCGGAUgCACGUCGU---CGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 120105 | 0.66 | 0.77204 |
Target: 5'- -gGUGCUGcGCCgccGCGUGguGgAcauGCUCa -3' miRNA: 3'- agCACGAC-CGGa--UGCACguCgU---CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 114314 | 0.69 | 0.621187 |
Target: 5'- aCGUGCUgcgcgacgggGGCCUgcgcgACGUGC-GCGuGCUCu -3' miRNA: 3'- aGCACGA----------CCGGA-----UGCACGuCGU-CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 114178 | 1.1 | 0.001222 |
Target: 5'- cUCGUGCUGGCCUACGUGCAGCAGCUCa -3' miRNA: 3'- -AGCACGACCGGAUGCACGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 114112 | 0.67 | 0.751917 |
Target: 5'- cUCGgcgGCUGcuGCCccACGUGCGccgccgccgagccGCGGCUCg -3' miRNA: 3'- -AGCa--CGAC--CGGa-UGCACGU-------------CGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 113333 | 0.71 | 0.490367 |
Target: 5'- cCGUGCUGGCgCUggcgcugaagcACGUGC-GCGGC-Cg -3' miRNA: 3'- aGCACGACCG-GA-----------UGCACGuCGUCGaG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 112841 | 0.71 | 0.509812 |
Target: 5'- gCGUGCUcacGCUcguggACGUGCAGCGGCa- -3' miRNA: 3'- aGCACGAc--CGGa----UGCACGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 106545 | 0.7 | 0.528577 |
Target: 5'- cCGUGCUGGCgCgcAUGUGCAuccccccGCGGCUg -3' miRNA: 3'- aGCACGACCG-Ga-UGCACGU-------CGUCGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 105082 | 0.67 | 0.752887 |
Target: 5'- aCGUGCaGGCCgucgagugGC-UGCAccaggcGCGGCUCa -3' miRNA: 3'- aGCACGaCCGGa-------UGcACGU------CGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 104648 | 0.66 | 0.762522 |
Target: 5'- aCGUGCgcgcGGCCgccgACGcgGCGcGCGcGCUCg -3' miRNA: 3'- aGCACGa---CCGGa---UGCa-CGU-CGU-CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 104585 | 0.68 | 0.662432 |
Target: 5'- aCGUGCUgcaGGCCgGCG-GCAGCcGCg- -3' miRNA: 3'- aGCACGA---CCGGaUGCaCGUCGuCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 104411 | 0.67 | 0.733301 |
Target: 5'- gCGUGCUGGCCcGCGccGCcGcCGGCa- -3' miRNA: 3'- aGCACGACCGGaUGCa-CGuC-GUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 104275 | 0.66 | 0.799795 |
Target: 5'- gCGgcgGCgGGCCcgccgcugcagGCGcUGCAGCGGCUg -3' miRNA: 3'- aGCa--CGaCCGGa----------UGC-ACGUCGUCGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 103539 | 0.67 | 0.723369 |
Target: 5'- gCGcGCUGGUggGCGccggGCAGCcGCUCg -3' miRNA: 3'- aGCaCGACCGgaUGCa---CGUCGuCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 103278 | 0.74 | 0.341892 |
Target: 5'- aCGUGCUGaGCCaggagACGcGCGcGCGGCUCg -3' miRNA: 3'- aGCACGAC-CGGa----UGCaCGU-CGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 95921 | 0.67 | 0.703277 |
Target: 5'- gCGUGCagucGCCcgaggGCGUGCGGUugaAGCUCu -3' miRNA: 3'- aGCACGac--CGGa----UGCACGUCG---UCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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