miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 5' -57.8 NC_006151.1 + 69700 0.68 0.693134
Target:  5'- gUCGaUGgUGGCCgccgcCGgggGCAGCAGCg- -3'
miRNA:   3'- -AGC-ACgACCGGau---GCa--CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 57505 0.68 0.693134
Target:  5'- aCGcGCUcGGCCgcgGCG-GCGGCGGC-Cg -3'
miRNA:   3'- aGCaCGA-CCGGa--UGCaCGUCGUCGaG- -5'
29409 5' -57.8 NC_006151.1 + 131941 0.68 0.68294
Target:  5'- cCGUaGCUGGCCacggGCGagggcggGCGGCAGUa- -3'
miRNA:   3'- aGCA-CGACCGGa---UGCa------CGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 120757 0.68 0.68294
Target:  5'- gCGUcaUGGCCUGgGUGCGGCGcccGCUg -3'
miRNA:   3'- aGCAcgACCGGAUgCACGUCGU---CGAg -5'
29409 5' -57.8 NC_006151.1 + 104585 0.68 0.662432
Target:  5'- aCGUGCUgcaGGCCgGCG-GCAGCcGCg- -3'
miRNA:   3'- aGCACGA---CCGGaUGCaCGUCGuCGag -5'
29409 5' -57.8 NC_006151.1 + 127965 0.68 0.662432
Target:  5'- cUCG-GCgaaggGGUCcacguacuCGUGCGGCGGCUCc -3'
miRNA:   3'- -AGCaCGa----CCGGau------GCACGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 85933 0.69 0.631505
Target:  5'- ---gGCUgGGCCUGCugcUGCAGCAGC-Cg -3'
miRNA:   3'- agcaCGA-CCGGAUGc--ACGUCGUCGaG- -5'
29409 5' -57.8 NC_006151.1 + 114314 0.69 0.621187
Target:  5'- aCGUGCUgcgcgacgggGGCCUgcgcgACGUGC-GCGuGCUCu -3'
miRNA:   3'- aGCACGA----------CCGGA-----UGCACGuCGU-CGAG- -5'
29409 5' -57.8 NC_006151.1 + 81594 0.69 0.610876
Target:  5'- gCGUcGCcggGGCCgccgGCGcGCAGCAGCa- -3'
miRNA:   3'- aGCA-CGa--CCGGa---UGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 39468 0.69 0.590311
Target:  5'- cCGUgcGCUGGCCcGgGUGCcGCgAGCUCc -3'
miRNA:   3'- aGCA--CGACCGGaUgCACGuCG-UCGAG- -5'
29409 5' -57.8 NC_006151.1 + 64321 0.7 0.559713
Target:  5'- cCGUGCUGGCCUcgcaccACGU-CGGCGGg-- -3'
miRNA:   3'- aGCACGACCGGA------UGCAcGUCGUCgag -5'
29409 5' -57.8 NC_006151.1 + 71761 0.7 0.559713
Target:  5'- cCGcGCgUGGuCCUGCG-GCAGCGGCg- -3'
miRNA:   3'- aGCaCG-ACC-GGAUGCaCGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 106545 0.7 0.528577
Target:  5'- cCGUGCUGGCgCgcAUGUGCAuccccccGCGGCUg -3'
miRNA:   3'- aGCACGACCG-Ga-UGCACGU-------CGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 67793 0.71 0.519655
Target:  5'- aCGUGCUccacgcGGCaCUcGCG-GCAGCAGCUg -3'
miRNA:   3'- aGCACGA------CCG-GA-UGCaCGUCGUCGAg -5'
29409 5' -57.8 NC_006151.1 + 112841 0.71 0.509812
Target:  5'- gCGUGCUcacGCUcguggACGUGCAGCGGCa- -3'
miRNA:   3'- aGCACGAc--CGGa----UGCACGUCGUCGag -5'
29409 5' -57.8 NC_006151.1 + 113333 0.71 0.490367
Target:  5'- cCGUGCUGGCgCUggcgcugaagcACGUGC-GCGGC-Cg -3'
miRNA:   3'- aGCACGACCG-GA-----------UGCACGuCGUCGaG- -5'
29409 5' -57.8 NC_006151.1 + 121044 0.72 0.452566
Target:  5'- uUUGUGCUGGCCUgcccgcGCGUG-GGCuucacguGCUCg -3'
miRNA:   3'- -AGCACGACCGGA------UGCACgUCGu------CGAG- -5'
29409 5' -57.8 NC_006151.1 + 59731 0.73 0.41641
Target:  5'- aCGggGUUGGCgaGCGcgcGCAGCAGCUCc -3'
miRNA:   3'- aGCa-CGACCGgaUGCa--CGUCGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 103278 0.74 0.341892
Target:  5'- aCGUGCUGaGCCaggagACGcGCGcGCGGCUCg -3'
miRNA:   3'- aGCACGAC-CGGa----UGCaCGU-CGUCGAG- -5'
29409 5' -57.8 NC_006151.1 + 62245 0.77 0.223148
Target:  5'- gUCGUGUccGG-CUACGUGCAGguGCUCc -3'
miRNA:   3'- -AGCACGa-CCgGAUGCACGUCguCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.