miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 92628 0.66 0.93866
Target:  5'- --cGCuGC-C-CCGACAUCAUG-CGCg -3'
miRNA:   3'- cuuCGuCGaGuGGCUGUAGUACcGCG- -5'
29410 3' -53.7 NC_006151.1 + 105945 0.66 0.93866
Target:  5'- --cGCcGCUCACCGAgGggcUCAUGGagacgGCg -3'
miRNA:   3'- cuuCGuCGAGUGGCUgU---AGUACCg----CG- -5'
29410 3' -53.7 NC_006151.1 + 19035 0.66 0.93866
Target:  5'- uGAAGCuGCaCGCCGGgucCA-CcgGGCGCa -3'
miRNA:   3'- -CUUCGuCGaGUGGCU---GUaGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 55518 0.66 0.93866
Target:  5'- -cGGCcacgAGgUCAUCGACAUCAcGcGCGCc -3'
miRNA:   3'- cuUCG----UCgAGUGGCUGUAGUaC-CGCG- -5'
29410 3' -53.7 NC_006151.1 + 81823 0.66 0.93866
Target:  5'- cGggGCAGCcggC-CCGcGCAUgAgcaGGCGCg -3'
miRNA:   3'- -CuuCGUCGa--GuGGC-UGUAgUa--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 90003 0.66 0.93866
Target:  5'- cAGGCuGCg-GgCGACGuuguUCGUGGCGCa -3'
miRNA:   3'- cUUCGuCGagUgGCUGU----AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 117568 0.66 0.93866
Target:  5'- aGAAG-GGCUCcCCGcggaggauggGCcgCGUGGCGCc -3'
miRNA:   3'- -CUUCgUCGAGuGGC----------UGuaGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 58631 0.66 0.938169
Target:  5'- -cAGCGGCUCguagaaggccagcGCCGGgAgggCGcGGCGCa -3'
miRNA:   3'- cuUCGUCGAG-------------UGGCUgUa--GUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 71986 0.66 0.938169
Target:  5'- gGggGCAGCUgguagCGCCGGCcgUugcugaagaccacGUcGGCGCc -3'
miRNA:   3'- -CuuCGUCGA-----GUGGCUGuaG-------------UA-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 73348 0.67 0.935676
Target:  5'- cGAAGaGGUUCugCGGCAgguugcccauguccgUCAcgggGGCGCg -3'
miRNA:   3'- -CUUCgUCGAGugGCUGU---------------AGUa---CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 105903 0.67 0.933637
Target:  5'- -uGGCGGCcaugcugugCACCGACGag--GGCGCc -3'
miRNA:   3'- cuUCGUCGa--------GUGGCUGUaguaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 22971 0.67 0.933637
Target:  5'- -cGGUGGUg-ACCGugGUCAUGGuCGUg -3'
miRNA:   3'- cuUCGUCGagUGGCugUAGUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 68034 0.67 0.933637
Target:  5'- cAGGCGGCcCGCCGGCG-CGgcgGGCa- -3'
miRNA:   3'- cUUCGUCGaGUGGCUGUaGUa--CCGcg -5'
29410 3' -53.7 NC_006151.1 + 123112 0.67 0.933637
Target:  5'- -cGGC-GCUCGgCGGCGagCcUGGCGCa -3'
miRNA:   3'- cuUCGuCGAGUgGCUGUa-GuACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3011 0.67 0.933637
Target:  5'- uGAGGCG----GCCGAUGUCggGGCGCc -3'
miRNA:   3'- -CUUCGUcgagUGGCUGUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 122449 0.67 0.933637
Target:  5'- gGAGGCGGCgUC-CaCGGCggCGgcgGGCGCc -3'
miRNA:   3'- -CUUCGUCG-AGuG-GCUGuaGUa--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 99211 0.67 0.93312
Target:  5'- gGAGGCGGUgcaggccagcgccUCGCCGcuGCAggUCGUggaGGCGCu -3'
miRNA:   3'- -CUUCGUCG-------------AGUGGC--UGU--AGUA---CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 123009 0.67 0.928361
Target:  5'- -cGGCGcGCcccCGCCGGCGgacgcCGUGGCGUg -3'
miRNA:   3'- cuUCGU-CGa--GUGGCUGUa----GUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 66139 0.67 0.928361
Target:  5'- cGGGCGGCcaGCCG-CAg-GUGGCGCu -3'
miRNA:   3'- cUUCGUCGagUGGCuGUagUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 54404 0.67 0.928361
Target:  5'- --cGCGGCcucggCGCCGAgG-CGcUGGCGCg -3'
miRNA:   3'- cuuCGUCGa----GUGGCUgUaGU-ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.