miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 111527 1.13 0.002186
Target:  5'- cGAAGCAGCUCACCGACAUCAUGGCGCg -3'
miRNA:   3'- -CUUCGUCGAGUGGCUGUAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 97472 0.81 0.25904
Target:  5'- cAGGCGGCUCACCGcCA-CGUGGaCGCg -3'
miRNA:   3'- cUUCGUCGAGUGGCuGUaGUACC-GCG- -5'
29410 3' -53.7 NC_006151.1 + 60753 0.79 0.336794
Target:  5'- -cGGCGGCUCGCgaaGGCgGUCGUGGCGUa -3'
miRNA:   3'- cuUCGUCGAGUGg--CUG-UAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 36729 0.77 0.412128
Target:  5'- cGAGGCGGCUCGauccUCGGCcgCuUGGCGCc -3'
miRNA:   3'- -CUUCGUCGAGU----GGCUGuaGuACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 133478 0.77 0.421121
Target:  5'- cGAGGCGGC-CGCgGGCGUCAccuUGGCGg -3'
miRNA:   3'- -CUUCGUCGaGUGgCUGUAGU---ACCGCg -5'
29410 3' -53.7 NC_006151.1 + 96594 0.75 0.496043
Target:  5'- cGAGGCgccgggcgcgGGCgCGCCGACGUCGUgcccgagGGCGCg -3'
miRNA:   3'- -CUUCG----------UCGaGUGGCUGUAGUA-------CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 95254 0.75 0.497031
Target:  5'- cGGGUAGUUC-CCGaugcGCAUCAUGGCGUu -3'
miRNA:   3'- cUUCGUCGAGuGGC----UGUAGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 107012 0.75 0.516976
Target:  5'- uGGAGCGGCUC-UCGGCGcugaUCGcGGCGCg -3'
miRNA:   3'- -CUUCGUCGAGuGGCUGU----AGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 26350 0.75 0.527068
Target:  5'- cGggGCGGCggcggGCCG-CGUCggGGCGCg -3'
miRNA:   3'- -CuuCGUCGag---UGGCuGUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 125181 0.75 0.547465
Target:  5'- cGAGCgccucGGcCUCGCCGGCGUCGUGGgcccCGCg -3'
miRNA:   3'- cUUCG-----UC-GAGUGGCUGUAGUACC----GCG- -5'
29410 3' -53.7 NC_006151.1 + 98935 0.74 0.568105
Target:  5'- cGAGCAGUUCGCCGAgGc---GGCGCg -3'
miRNA:   3'- cUUCGUCGAGUGGCUgUaguaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 58390 0.74 0.568105
Target:  5'- aGAGcGCGGCgcaGCCGGC--CAUGGCGCg -3'
miRNA:   3'- -CUU-CGUCGag-UGGCUGuaGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 64613 0.74 0.5785
Target:  5'- -cAGCGGCgccgcgcCGCCGGCcgCggGGCGCg -3'
miRNA:   3'- cuUCGUCGa------GUGGCUGuaGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 90919 0.74 0.5785
Target:  5'- -cAGCAGCccgugCGCCGucucgaGCGUCAUGGCGa -3'
miRNA:   3'- cuUCGUCGa----GUGGC------UGUAGUACCGCg -5'
29410 3' -53.7 NC_006151.1 + 65457 0.74 0.588935
Target:  5'- uGgcGCAGCggCGCCGAgaguccCAUCA-GGCGCa -3'
miRNA:   3'- -CuuCGUCGa-GUGGCU------GUAGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 20787 0.74 0.598355
Target:  5'- cGAGCGGCUCGCgcuugcgcaGACAgccgcggaaggccUCGUGGUGCa -3'
miRNA:   3'- cUUCGUCGAGUGg--------CUGU-------------AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 101520 0.73 0.609897
Target:  5'- cGGGCAGaUCACCcaGGCcuUCGUGGCGCg -3'
miRNA:   3'- cUUCGUCgAGUGG--CUGu-AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 86488 0.73 0.620409
Target:  5'- -uGGC-GCUCugCGugAUCGggcGGCGCg -3'
miRNA:   3'- cuUCGuCGAGugGCugUAGUa--CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 63189 0.73 0.63093
Target:  5'- cGggGCcgGGCUCGCCGAC--CAUGG-GCu -3'
miRNA:   3'- -CuuCG--UCGAGUGGCUGuaGUACCgCG- -5'
29410 3' -53.7 NC_006151.1 + 139965 0.73 0.641452
Target:  5'- cGAGCAGUUCACCccgGACGggc-GGCGCg -3'
miRNA:   3'- cUUCGUCGAGUGG---CUGUaguaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.