miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 3' -53.7 NC_006151.1 + 667 0.71 0.764427
Target:  5'- cGggGCGGgCUcCGCgGAUcgCAUcGGCGCg -3'
miRNA:   3'- -CuuCGUC-GA-GUGgCUGuaGUA-CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 2033 0.66 0.956268
Target:  5'- cGGAGCAGCagguaggggUUGCCGGCGUCcucGGCc- -3'
miRNA:   3'- -CUUCGUCG---------AGUGGCUGUAGua-CCGcg -5'
29410 3' -53.7 NC_006151.1 + 2642 0.67 0.917052
Target:  5'- -cGGguGCUCACCGuguagcgcACGUUGUccuggcggcagaGGCGCa -3'
miRNA:   3'- cuUCguCGAGUGGC--------UGUAGUA------------CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3011 0.67 0.933637
Target:  5'- uGAGGCG----GCCGAUGUCggGGCGCc -3'
miRNA:   3'- -CUUCGUcgagUGGCUGUAGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3088 0.66 0.956268
Target:  5'- aAGGCGGCgagcagCGCCGAgAggccgcCGcGGCGCg -3'
miRNA:   3'- cUUCGUCGa-----GUGGCUgUa-----GUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3241 0.68 0.898207
Target:  5'- cAGGCGGCgCGgCGGCGgagCggGGCGCc -3'
miRNA:   3'- cUUCGUCGaGUgGCUGUa--GuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 3437 0.7 0.78365
Target:  5'- --cGCGGCggaaGCCGcCGUCG-GGCGCg -3'
miRNA:   3'- cuuCGUCGag--UGGCuGUAGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 5092 0.68 0.869684
Target:  5'- --cGCGGCgggCGCCGGCGgagacgGUGGCGg -3'
miRNA:   3'- cuuCGUCGa--GUGGCUGUag----UACCGCg -5'
29410 3' -53.7 NC_006151.1 + 5620 0.66 0.93866
Target:  5'- gGAGGgGGCgcCGCCG-CcgCcgGGCGCc -3'
miRNA:   3'- -CUUCgUCGa-GUGGCuGuaGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 11881 0.67 0.922833
Target:  5'- --cGCGGCgauucggGCCG-CAUCGaGGCGCg -3'
miRNA:   3'- cuuCGUCGag-----UGGCuGUAGUaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 14523 0.68 0.891433
Target:  5'- gGggGUcguGGCUCacGCUGACGUCAUG-CGUu -3'
miRNA:   3'- -CuuCG---UCGAG--UGGCUGUAGUACcGCG- -5'
29410 3' -53.7 NC_006151.1 + 16956 0.66 0.956268
Target:  5'- --uGCAGggccucguccaCUCGCCGGC---GUGGCGCc -3'
miRNA:   3'- cuuCGUC-----------GAGUGGCUGuagUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 16989 0.67 0.91646
Target:  5'- aGGAGCGGUUguggaccCGCgCGAa--CAUGGCGCg -3'
miRNA:   3'- -CUUCGUCGA-------GUG-GCUguaGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 17947 0.67 0.915268
Target:  5'- -cGGCGGCgUCuccggcgcccgccuGCCGGCGUCccacgcGGCGCa -3'
miRNA:   3'- cuUCGUCG-AG--------------UGGCUGUAGua----CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 18700 0.72 0.672935
Target:  5'- cGGGCGGC--GCCGGCGUCGUGaCGCc -3'
miRNA:   3'- cUUCGUCGagUGGCUGUAGUACcGCG- -5'
29410 3' -53.7 NC_006151.1 + 19035 0.66 0.93866
Target:  5'- uGAAGCuGCaCGCCGGgucCA-CcgGGCGCa -3'
miRNA:   3'- -CUUCGuCGaGUGGCU---GUaGuaCCGCG- -5'
29410 3' -53.7 NC_006151.1 + 20331 0.66 0.952233
Target:  5'- cGAGCAGgaCGCgCGACA-CGacgcUGGCGUu -3'
miRNA:   3'- cUUCGUCgaGUG-GCUGUaGU----ACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 20787 0.74 0.598355
Target:  5'- cGAGCGGCUCGCgcuugcgcaGACAgccgcggaaggccUCGUGGUGCa -3'
miRNA:   3'- cUUCGUCGAGUGg--------CUGU-------------AGUACCGCG- -5'
29410 3' -53.7 NC_006151.1 + 20953 0.68 0.891433
Target:  5'- -cAGCAGgUC-CCGucgauCGUCAgguugGGCGCg -3'
miRNA:   3'- cuUCGUCgAGuGGCu----GUAGUa----CCGCG- -5'
29410 3' -53.7 NC_006151.1 + 21287 0.67 0.904737
Target:  5'- --cGCGGUgcccgUGCCGACgAUCAccgagcggUGGCGCg -3'
miRNA:   3'- cuuCGUCGa----GUGGCUG-UAGU--------ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.