miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 5' -62.1 NC_006151.1 + 111562 1.1 0.000705
Target:  5'- cGCGUGUCCACGCCCCCGGCGCGCUUGa -3'
miRNA:   3'- -CGCACAGGUGCGGGGGCCGCGCGAAC- -5'
29410 5' -62.1 NC_006151.1 + 83341 0.83 0.054702
Target:  5'- cGCGcGUCCACGUgcuCCCCGGCGCGCg-- -3'
miRNA:   3'- -CGCaCAGGUGCG---GGGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 111130 0.81 0.084766
Target:  5'- cGCGUcuGUgCGCGCCCCCGcGCGCGCg-- -3'
miRNA:   3'- -CGCA--CAgGUGCGGGGGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 43082 0.8 0.093859
Target:  5'- cGCGUGUCCGCuccCCCCCGugucGCGCGCUg- -3'
miRNA:   3'- -CGCACAGGUGc--GGGGGC----CGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 135477 0.79 0.109246
Target:  5'- aGCGUGUCCGCGCgggCCaggCGGCGCGCg-- -3'
miRNA:   3'- -CGCACAGGUGCG---GGg--GCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 65375 0.76 0.162517
Target:  5'- gGCGUGcaCCACguGCCCCgGGCGCGCcgUGa -3'
miRNA:   3'- -CGCACa-GGUG--CGGGGgCCGCGCGa-AC- -5'
29410 5' -62.1 NC_006151.1 + 81176 0.76 0.179094
Target:  5'- gGCGaUGUCCACGCCgCCGaGCGUGUa-- -3'
miRNA:   3'- -CGC-ACAGGUGCGGgGGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 59317 0.76 0.187933
Target:  5'- aGCGgGcCCGCGCCCCCGcccgcccccaGCGCGCUc- -3'
miRNA:   3'- -CGCaCaGGUGCGGGGGC----------CGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 3121 0.74 0.234763
Target:  5'- cGCGgGUCCcaggccgggcgcgggGCGCCCUCGGCGgGCUc- -3'
miRNA:   3'- -CGCaCAGG---------------UGCGGGGGCCGCgCGAac -5'
29410 5' -62.1 NC_006151.1 + 130534 0.74 0.238063
Target:  5'- cGCGUa--CACGCCCCCgcgcgagggcGGCGCGCUg- -3'
miRNA:   3'- -CGCAcagGUGCGGGGG----------CCGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 56597 0.73 0.285839
Target:  5'- uGCGga--CGCGCCCCggCGGCGCGCUc- -3'
miRNA:   3'- -CGCacagGUGCGGGG--GCCGCGCGAac -5'
29410 5' -62.1 NC_006151.1 + 49687 0.72 0.292316
Target:  5'- cGCGga--CGCGCCCCCGGagaGCGCa-- -3'
miRNA:   3'- -CGCacagGUGCGGGGGCCg--CGCGaac -5'
29410 5' -62.1 NC_006151.1 + 86179 0.72 0.292316
Target:  5'- uCGUGgccgCCGCgcuGCCCCCGGCGgGCc-- -3'
miRNA:   3'- cGCACa---GGUG---CGGGGGCCGCgCGaac -5'
29410 5' -62.1 NC_006151.1 + 17477 0.72 0.319368
Target:  5'- gGCGUGUCCuCGUCggCGGCGCGCc-- -3'
miRNA:   3'- -CGCACAGGuGCGGggGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 128194 0.72 0.319368
Target:  5'- aGCGUG-CCGCGCuccauggcgCCCCaGGCGUGCg-- -3'
miRNA:   3'- -CGCACaGGUGCG---------GGGG-CCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 94717 0.72 0.325708
Target:  5'- cGCGcuccagCCGCGCCacggcguCCCGGCGCGCg-- -3'
miRNA:   3'- -CGCaca---GGUGCGG-------GGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 58942 0.72 0.326418
Target:  5'- aGCGccgcaaaGUCCACgGCCCCCucGGUGCGCg-- -3'
miRNA:   3'- -CGCa------CAGGUG-CGGGGG--CCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 58424 0.71 0.333583
Target:  5'- gGCGUGcggcagCCACGCCUCggUGGCGUGCg-- -3'
miRNA:   3'- -CGCACa-----GGUGCGGGG--GCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 97582 0.71 0.340863
Target:  5'- cGCG-GUCCACGUCCaUCaGCGCGCa-- -3'
miRNA:   3'- -CGCaCAGGUGCGGG-GGcCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 24872 0.71 0.348256
Target:  5'- cCGUGUCCGCcucGCCCggCCGGCGgGCc-- -3'
miRNA:   3'- cGCACAGGUG---CGGG--GGCCGCgCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.