miRNA display CGI


Results 1 - 20 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29410 5' -62.1 NC_006151.1 + 2211 0.71 0.363385
Target:  5'- gGUGgGUCUccacgGCGCCCCCGGCggcgGCGCg-- -3'
miRNA:   3'- -CGCaCAGG-----UGCGGGGGCCG----CGCGaac -5'
29410 5' -62.1 NC_006151.1 + 2509 0.67 0.595141
Target:  5'- cGCGUcaaaGUCCGgGUCCCCGaGCccgaGCGCg-- -3'
miRNA:   3'- -CGCA----CAGGUgCGGGGGC-CG----CGCGaac -5'
29410 5' -62.1 NC_006151.1 + 3121 0.74 0.234763
Target:  5'- cGCGgGUCCcaggccgggcgcgggGCGCCCUCGGCGgGCUc- -3'
miRNA:   3'- -CGCaCAGG---------------UGCGGGGGCCGCgCGAac -5'
29410 5' -62.1 NC_006151.1 + 3683 0.67 0.585379
Target:  5'- gGCGg---CGgGCCCCgGGCGCGCg-- -3'
miRNA:   3'- -CGCacagGUgCGGGGgCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 7635 0.66 0.604928
Target:  5'- cGCG-GUcgccccacCCGCGCCucgcgCUCGGCGCGCg-- -3'
miRNA:   3'- -CGCaCA--------GGUGCGG-----GGGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 8307 0.7 0.386917
Target:  5'- cGCGUc-CCGCcccgaGCCCCCGGgGCGCg-- -3'
miRNA:   3'- -CGCAcaGGUG-----CGGGGGCCgCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 8826 0.66 0.624552
Target:  5'- cGUGUGUgCGCGCgccucuCCCCGuGCGUGUc-- -3'
miRNA:   3'- -CGCACAgGUGCG------GGGGC-CGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 10294 0.69 0.481235
Target:  5'- gGCGggcacGUcCCGCGUCCCCGGCGUcaucacGCg-- -3'
miRNA:   3'- -CGCa----CA-GGUGCGGGGGCCGCG------CGaac -5'
29410 5' -62.1 NC_006151.1 + 10500 0.67 0.575648
Target:  5'- cGCGcGcCCgccgccgcaggcGCGUCCCCGGCGCGg--- -3'
miRNA:   3'- -CGCaCaGG------------UGCGGGGGCCGCGCgaac -5'
29410 5' -62.1 NC_006151.1 + 13423 0.66 0.663806
Target:  5'- cCGgGcCCGCGUCCCCGGgGCccGCaUUGg -3'
miRNA:   3'- cGCaCaGGUGCGGGGGCCgCG--CG-AAC- -5'
29410 5' -62.1 NC_006151.1 + 15039 0.68 0.508869
Target:  5'- uGCGcGUCCACgGCgcgcggggCCCCGGCGC-CUUc -3'
miRNA:   3'- -CGCaCAGGUG-CG--------GGGGCCGCGcGAAc -5'
29410 5' -62.1 NC_006151.1 + 16894 0.68 0.53715
Target:  5'- cGCGUccguugCCGCGCccgCCCCGGCGCcgGCg-- -3'
miRNA:   3'- -CGCAca----GGUGCG---GGGGCCGCG--CGaac -5'
29410 5' -62.1 NC_006151.1 + 17386 0.67 0.575648
Target:  5'- cCGUGUCCGCacgacgggGCgCgUGGCGCGCg-- -3'
miRNA:   3'- cGCACAGGUG--------CGgGgGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 17477 0.72 0.319368
Target:  5'- gGCGUGUCCuCGUCggCGGCGCGCc-- -3'
miRNA:   3'- -CGCACAGGuGCGGggGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 17603 0.66 0.633392
Target:  5'- aGCGUGaCCACGgugauggccgucaCCCCCauGGCGCGa--- -3'
miRNA:   3'- -CGCACaGGUGC-------------GGGGG--CCGCGCgaac -5'
29410 5' -62.1 NC_006151.1 + 19258 0.66 0.614734
Target:  5'- cGCGUGgaagCgGgGCUCgUGGCGCGCg-- -3'
miRNA:   3'- -CGCACa---GgUgCGGGgGCCGCGCGaac -5'
29410 5' -62.1 NC_006151.1 + 21444 0.68 0.53715
Target:  5'- gGCGUGgggugGCCCCCGGCgGCGUg-- -3'
miRNA:   3'- -CGCACaggugCGGGGGCCG-CGCGaac -5'
29410 5' -62.1 NC_006151.1 + 24566 0.66 0.644196
Target:  5'- cCGUGUCCACGUCCUCGaGgaagauguucucCGC-CUUGa -3'
miRNA:   3'- cGCACAGGUGCGGGGGC-C------------GCGcGAAC- -5'
29410 5' -62.1 NC_006151.1 + 24872 0.71 0.348256
Target:  5'- cCGUGUCCGCcucGCCCggCCGGCGgGCc-- -3'
miRNA:   3'- cGCACAGGUG---CGGG--GGCCGCgCGaac -5'
29410 5' -62.1 NC_006151.1 + 26366 0.7 0.386917
Target:  5'- cGCGUcGgggCgCGCGuCCCCCGGCGgGCg-- -3'
miRNA:   3'- -CGCA-Ca--G-GUGC-GGGGGCCGCgCGaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.