miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 75835 0.67 0.610103
Target:  5'- cCGGCCGUggUCA-CaGCA-CCCCGUCg -3'
miRNA:   3'- -GCCGGCGuaGGUaGaCGUcGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 60656 0.67 0.600109
Target:  5'- cCGcGCCGCGUCCucgcucccGUC-GCcGCCgCCGUCc -3'
miRNA:   3'- -GC-CGGCGUAGG--------UAGaCGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 132868 0.67 0.590138
Target:  5'- gGGCCGCGcCCccCaGCagGGCCUCGUCg -3'
miRNA:   3'- gCCGGCGUaGGuaGaCG--UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 120751 0.67 0.586157
Target:  5'- cCGGCCGCGUCauggccugggUGCGGCgCCCGc- -3'
miRNA:   3'- -GCCGGCGUAGguag------ACGUCG-GGGCag -5'
29411 3' -60.7 NC_006151.1 + 53628 0.68 0.580196
Target:  5'- aGGUCGCG-CU-UCUGCAGCUcgcgcaCCGUCg -3'
miRNA:   3'- gCCGGCGUaGGuAGACGUCGG------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 103805 0.68 0.580196
Target:  5'- aGGCCGCG-CUGUCgGCGGCCgUGg- -3'
miRNA:   3'- gCCGGCGUaGGUAGaCGUCGGgGCag -5'
29411 3' -60.7 NC_006151.1 + 89696 0.68 0.580196
Target:  5'- aCGGCCGCcgcGUCCAggaacccgGCGGCgCCGg- -3'
miRNA:   3'- -GCCGGCG---UAGGUaga-----CGUCGgGGCag -5'
29411 3' -60.7 NC_006151.1 + 50856 0.68 0.570289
Target:  5'- gCGGCCGCccUCCcgCgccccCGGaCCCCGUCc -3'
miRNA:   3'- -GCCGGCGu-AGGuaGac---GUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 130903 0.68 0.550608
Target:  5'- gCGGCCGUcgCCGUCgucggugGCcgGGCCCgCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUAGa------CG--UCGGG-GCag -5'
29411 3' -60.7 NC_006151.1 + 127565 0.68 0.550608
Target:  5'- uGGCCGCcgCCGgcgccUCguucGCcGuCCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGU-----AGa---CGuC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 69708 0.68 0.550608
Target:  5'- uGGCCGCcgCCGgggGCAGCagCgCGUCg -3'
miRNA:   3'- gCCGGCGuaGGUagaCGUCGg-G-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 107720 0.68 0.540844
Target:  5'- aGGCCGCcgcggcccCCAagCaGCAGCCCCGg- -3'
miRNA:   3'- gCCGGCGua------GGUa-GaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 39809 0.68 0.540844
Target:  5'- gGGCUcgGCGcCCcgCUGCGGC-CCGUCu -3'
miRNA:   3'- gCCGG--CGUaGGuaGACGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 44686 0.68 0.540844
Target:  5'- gCGGCCGgcggcugacCGUaCCAUCUGCuGCCCaugguGUCc -3'
miRNA:   3'- -GCCGGC---------GUA-GGUAGACGuCGGGg----CAG- -5'
29411 3' -60.7 NC_006151.1 + 117088 0.68 0.540844
Target:  5'- uGGUCGCGUCCAcgc-CGGCCUCGUg -3'
miRNA:   3'- gCCGGCGUAGGUagacGUCGGGGCAg -5'
29411 3' -60.7 NC_006151.1 + 93059 0.68 0.531139
Target:  5'- gGGCCaC-UCCGUCcGCgGGCUCCGUCu -3'
miRNA:   3'- gCCGGcGuAGGUAGaCG-UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 36745 0.68 0.531139
Target:  5'- uCGGCCGCuuggcgCCc---GgAGCCCCGUCu -3'
miRNA:   3'- -GCCGGCGua----GGuagaCgUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 68017 0.69 0.521498
Target:  5'- uCGGCgGCGUCCAggUCcagGCGGCCCg--- -3'
miRNA:   3'- -GCCGgCGUAGGU--AGa--CGUCGGGgcag -5'
29411 3' -60.7 NC_006151.1 + 57433 0.69 0.521498
Target:  5'- aGcGUCaCGUCCGUCgcgGCGGCCCCcgcGUCg -3'
miRNA:   3'- gC-CGGcGUAGGUAGa--CGUCGGGG---CAG- -5'
29411 3' -60.7 NC_006151.1 + 6139 0.69 0.511926
Target:  5'- cCGGCCGCggCCG-CgaggacgGCGGCCUCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUaGa------CGUCGGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.