Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29411 | 3' | -60.7 | NC_006151.1 | + | 2867 | 0.66 | 0.699871 |
Target: 5'- aCGGCCGgG-CCGUCcGCGGgCCaGUCc -3' miRNA: 3'- -GCCGGCgUaGGUAGaCGUCgGGgCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 4021 | 0.7 | 0.436567 |
Target: 5'- gGGCCGCggcguagGUCCAggcggccUCgcggGCgcgGGCCCCGUCc -3' miRNA: 3'- gCCGGCG-------UAGGU-------AGa---CG---UCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 4663 | 0.71 | 0.409774 |
Target: 5'- gGGCCuGCAUCCGcggguUCUGCAGCCaggacauggccucgCCGg- -3' miRNA: 3'- gCCGG-CGUAGGU-----AGACGUCGG--------------GGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 4939 | 0.69 | 0.502428 |
Target: 5'- gCGGCC-CGUCgGUCgGCGGgggCCCGUCg -3' miRNA: 3'- -GCCGGcGUAGgUAGaCGUCg--GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 6139 | 0.69 | 0.511926 |
Target: 5'- cCGGCCGCggCCG-CgaggacgGCGGCCUCGg- -3' miRNA: 3'- -GCCGGCGuaGGUaGa------CGUCGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 11992 | 0.7 | 0.465251 |
Target: 5'- cCGcGCCGCu---GUCUGUGGCgCCCGUCg -3' miRNA: 3'- -GC-CGGCGuaggUAGACGUCG-GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 16887 | 0.66 | 0.650166 |
Target: 5'- gCGcGCuCGCGUCCGUUgccGCGcccGCCCCGg- -3' miRNA: 3'- -GC-CG-GCGUAGGUAGa--CGU---CGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 17077 | 0.72 | 0.35551 |
Target: 5'- gGGCCGCcgCCggGUCagGCGcGCgCCCGUCg -3' miRNA: 3'- gCCGGCGuaGG--UAGa-CGU-CG-GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 30559 | 0.82 | 0.073972 |
Target: 5'- cCGcGCCGCAcgcgCCGUCccGCGGCCCCGUCg -3' miRNA: 3'- -GC-CGGCGUa---GGUAGa-CGUCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 31207 | 0.66 | 0.650166 |
Target: 5'- uGGcCCGCGUCCAg--GCcgGGCCCCc-- -3' miRNA: 3'- gCC-GGCGUAGGUagaCG--UCGGGGcag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 32039 | 0.69 | 0.502428 |
Target: 5'- --uCCGCGUCCGcagccgccUCUGCAGCCgCCGcCc -3' miRNA: 3'- gccGGCGUAGGU--------AGACGUCGG-GGCaG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 36128 | 0.73 | 0.277876 |
Target: 5'- gCGGCCGCGgccggagCCA-CgagGCcGCCCCGUCc -3' miRNA: 3'- -GCCGGCGUa------GGUaGa--CGuCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 36384 | 0.67 | 0.630132 |
Target: 5'- aGGCCGgGgCCccCgGCGGCCCCGg- -3' miRNA: 3'- gCCGGCgUaGGuaGaCGUCGGGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 36745 | 0.68 | 0.531139 |
Target: 5'- uCGGCCGCuuggcgCCc---GgAGCCCCGUCu -3' miRNA: 3'- -GCCGGCGua----GGuagaCgUCGGGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 37156 | 0.73 | 0.293585 |
Target: 5'- gGGCCGCcaCCGUCUccgccggcgcccgccGCGGCCCCG-Cg -3' miRNA: 3'- gCCGGCGuaGGUAGA---------------CGUCGGGGCaG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 37391 | 0.74 | 0.247313 |
Target: 5'- aCGGCCGCGUCCG-CUacgGCGGCgCCGg- -3' miRNA: 3'- -GCCGGCGUAGGUaGA---CGUCGgGGCag -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 37460 | 0.67 | 0.640152 |
Target: 5'- aGGCCGCggCCcgCUaccgcgccGCGGCcgggcccgugCCCGUCu -3' miRNA: 3'- gCCGGCGuaGGuaGA--------CGUCG----------GGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 38152 | 0.7 | 0.465251 |
Target: 5'- aGGCCGCGgac-UCUGUcGCCCuCGUCg -3' miRNA: 3'- gCCGGCGUagguAGACGuCGGG-GCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 39809 | 0.68 | 0.540844 |
Target: 5'- gGGCUcgGCGcCCcgCUGCGGC-CCGUCu -3' miRNA: 3'- gCCGG--CGUaGGuaGACGUCGgGGCAG- -5' |
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29411 | 3' | -60.7 | NC_006151.1 | + | 39846 | 0.69 | 0.493007 |
Target: 5'- gCGGCCGCcggggccucgCCGagcUCcGCGGCCCCGa- -3' miRNA: 3'- -GCCGGCGua--------GGU---AGaCGUCGGGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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