miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 110992 1.09 0.000882
Target:  5'- uCGGCCGCAUCCAUCUGCAGCCCCGUCg -3'
miRNA:   3'- -GCCGGCGUAGGUAGACGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 30559 0.82 0.073972
Target:  5'- cCGcGCCGCAcgcgCCGUCccGCGGCCCCGUCg -3'
miRNA:   3'- -GC-CGGCGUa---GGUAGa-CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 50718 0.76 0.20376
Target:  5'- aCGGCCGCcccggcgGUCCAgCUGCcccGGCCCCGg- -3'
miRNA:   3'- -GCCGGCG-------UAGGUaGACG---UCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 52073 0.75 0.219586
Target:  5'- gCGuGuaGCuGUCCGUCUGCAGCgCCGUCg -3'
miRNA:   3'- -GC-CggCG-UAGGUAGACGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 37391 0.74 0.247313
Target:  5'- aCGGCCGCGUCCG-CUacgGCGGCgCCGg- -3'
miRNA:   3'- -GCCGGCGUAGGUaGA---CGUCGgGGCag -5'
29411 3' -60.7 NC_006151.1 + 135873 0.74 0.253195
Target:  5'- uGGCCaGCGUCCGcgUGCGGCCCguguuCGUCg -3'
miRNA:   3'- gCCGG-CGUAGGUagACGUCGGG-----GCAG- -5'
29411 3' -60.7 NC_006151.1 + 36128 0.73 0.277876
Target:  5'- gCGGCCGCGgccggagCCA-CgagGCcGCCCCGUCc -3'
miRNA:   3'- -GCCGGCGUa------GGUaGa--CGuCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 37156 0.73 0.293585
Target:  5'- gGGCCGCcaCCGUCUccgccggcgcccgccGCGGCCCCG-Cg -3'
miRNA:   3'- gCCGGCGuaGGUAGA---------------CGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 90999 0.73 0.297619
Target:  5'- uGGCgCGC-UCCAgcacgGCGGUCCCGUCg -3'
miRNA:   3'- gCCG-GCGuAGGUaga--CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 17077 0.72 0.35551
Target:  5'- gGGCCGCcgCCggGUCagGCGcGCgCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGG--UAGa-CGU-CG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 61196 0.71 0.371168
Target:  5'- aGcGCCGCGgagagCCAUUUcaGCAGCgCCGUCg -3'
miRNA:   3'- gC-CGGCGUa----GGUAGA--CGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 84322 0.71 0.371168
Target:  5'- uGGCCGCGaCCGUgcGCGGCCUCGcCg -3'
miRNA:   3'- gCCGGCGUaGGUAgaCGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 100583 0.71 0.387291
Target:  5'- aGGCCGCcaCCGUcCUGCGG-CCCGUg -3'
miRNA:   3'- gCCGGCGuaGGUA-GACGUCgGGGCAg -5'
29411 3' -60.7 NC_006151.1 + 86824 0.71 0.387291
Target:  5'- cCGGCCcaguGCggCCAUg-GCAGCCCCGcCg -3'
miRNA:   3'- -GCCGG----CGuaGGUAgaCGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 65830 0.71 0.395523
Target:  5'- gCGGCCGCG-CCAgc-GCGGCCCgGcUCa -3'
miRNA:   3'- -GCCGGCGUaGGUagaCGUCGGGgC-AG- -5'
29411 3' -60.7 NC_006151.1 + 4663 0.71 0.409774
Target:  5'- gGGCCuGCAUCCGcggguUCUGCAGCCaggacauggccucgCCGg- -3'
miRNA:   3'- gCCGG-CGUAGGU-----AGACGUCGG--------------GGCag -5'
29411 3' -60.7 NC_006151.1 + 90893 0.7 0.420886
Target:  5'- cCGGcCCGCAgCCG-CUGCAGCagCGUCa -3'
miRNA:   3'- -GCC-GGCGUaGGUaGACGUCGggGCAG- -5'
29411 3' -60.7 NC_006151.1 + 78178 0.7 0.420886
Target:  5'- aGGCCGUGUCCgccGUCgcgGCGGaCCCCuUCu -3'
miRNA:   3'- gCCGGCGUAGG---UAGa--CGUC-GGGGcAG- -5'
29411 3' -60.7 NC_006151.1 + 108108 0.7 0.429555
Target:  5'- gCGGCCGCgcagGUCCcccCU-CAGcCCCCGUCg -3'
miRNA:   3'- -GCCGGCG----UAGGua-GAcGUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 4021 0.7 0.436567
Target:  5'- gGGCCGCggcguagGUCCAggcggccUCgcggGCgcgGGCCCCGUCc -3'
miRNA:   3'- gCCGGCG-------UAGGU-------AGa---CG---UCGGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.