miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 2867 0.66 0.699871
Target:  5'- aCGGCCGgG-CCGUCcGCGGgCCaGUCc -3'
miRNA:   3'- -GCCGGCgUaGGUAGaCGUCgGGgCAG- -5'
29411 3' -60.7 NC_006151.1 + 4021 0.7 0.436567
Target:  5'- gGGCCGCggcguagGUCCAggcggccUCgcggGCgcgGGCCCCGUCc -3'
miRNA:   3'- gCCGGCG-------UAGGU-------AGa---CG---UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 4663 0.71 0.409774
Target:  5'- gGGCCuGCAUCCGcggguUCUGCAGCCaggacauggccucgCCGg- -3'
miRNA:   3'- gCCGG-CGUAGGU-----AGACGUCGG--------------GGCag -5'
29411 3' -60.7 NC_006151.1 + 4939 0.69 0.502428
Target:  5'- gCGGCC-CGUCgGUCgGCGGgggCCCGUCg -3'
miRNA:   3'- -GCCGGcGUAGgUAGaCGUCg--GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 6139 0.69 0.511926
Target:  5'- cCGGCCGCggCCG-CgaggacgGCGGCCUCGg- -3'
miRNA:   3'- -GCCGGCGuaGGUaGa------CGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 11992 0.7 0.465251
Target:  5'- cCGcGCCGCu---GUCUGUGGCgCCCGUCg -3'
miRNA:   3'- -GC-CGGCGuaggUAGACGUCG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 16887 0.66 0.650166
Target:  5'- gCGcGCuCGCGUCCGUUgccGCGcccGCCCCGg- -3'
miRNA:   3'- -GC-CG-GCGUAGGUAGa--CGU---CGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 17077 0.72 0.35551
Target:  5'- gGGCCGCcgCCggGUCagGCGcGCgCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGG--UAGa-CGU-CG-GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 30559 0.82 0.073972
Target:  5'- cCGcGCCGCAcgcgCCGUCccGCGGCCCCGUCg -3'
miRNA:   3'- -GC-CGGCGUa---GGUAGa-CGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 31207 0.66 0.650166
Target:  5'- uGGcCCGCGUCCAg--GCcgGGCCCCc-- -3'
miRNA:   3'- gCC-GGCGUAGGUagaCG--UCGGGGcag -5'
29411 3' -60.7 NC_006151.1 + 32039 0.69 0.502428
Target:  5'- --uCCGCGUCCGcagccgccUCUGCAGCCgCCGcCc -3'
miRNA:   3'- gccGGCGUAGGU--------AGACGUCGG-GGCaG- -5'
29411 3' -60.7 NC_006151.1 + 36128 0.73 0.277876
Target:  5'- gCGGCCGCGgccggagCCA-CgagGCcGCCCCGUCc -3'
miRNA:   3'- -GCCGGCGUa------GGUaGa--CGuCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 36384 0.67 0.630132
Target:  5'- aGGCCGgGgCCccCgGCGGCCCCGg- -3'
miRNA:   3'- gCCGGCgUaGGuaGaCGUCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 36745 0.68 0.531139
Target:  5'- uCGGCCGCuuggcgCCc---GgAGCCCCGUCu -3'
miRNA:   3'- -GCCGGCGua----GGuagaCgUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 37156 0.73 0.293585
Target:  5'- gGGCCGCcaCCGUCUccgccggcgcccgccGCGGCCCCG-Cg -3'
miRNA:   3'- gCCGGCGuaGGUAGA---------------CGUCGGGGCaG- -5'
29411 3' -60.7 NC_006151.1 + 37391 0.74 0.247313
Target:  5'- aCGGCCGCGUCCG-CUacgGCGGCgCCGg- -3'
miRNA:   3'- -GCCGGCGUAGGUaGA---CGUCGgGGCag -5'
29411 3' -60.7 NC_006151.1 + 37460 0.67 0.640152
Target:  5'- aGGCCGCggCCcgCUaccgcgccGCGGCcgggcccgugCCCGUCu -3'
miRNA:   3'- gCCGGCGuaGGuaGA--------CGUCG----------GGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 38152 0.7 0.465251
Target:  5'- aGGCCGCGgac-UCUGUcGCCCuCGUCg -3'
miRNA:   3'- gCCGGCGUagguAGACGuCGGG-GCAG- -5'
29411 3' -60.7 NC_006151.1 + 39809 0.68 0.540844
Target:  5'- gGGCUcgGCGcCCcgCUGCGGC-CCGUCu -3'
miRNA:   3'- gCCGG--CGUaGGuaGACGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 39846 0.69 0.493007
Target:  5'- gCGGCCGCcggggccucgCCGagcUCcGCGGCCCCGa- -3'
miRNA:   3'- -GCCGGCGua--------GGU---AGaCGUCGGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.