miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 3' -60.7 NC_006151.1 + 39941 0.66 0.660166
Target:  5'- aGGCCGC--CCcgCUGguGCUgaccccgggcgCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGuaGACguCGG-----------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 44686 0.68 0.540844
Target:  5'- gCGGCCGgcggcugacCGUaCCAUCUGCuGCCCaugguGUCc -3'
miRNA:   3'- -GCCGGC---------GUA-GGUAGACGuCGGGg----CAG- -5'
29411 3' -60.7 NC_006151.1 + 45906 0.67 0.630132
Target:  5'- uGGCUGCAUCCAgcgCUGgA-CCCUGa- -3'
miRNA:   3'- gCCGGCGUAGGUa--GACgUcGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 49955 0.67 0.640152
Target:  5'- uGGCCGCggCCcuggCcgGCcuCCCCGUCg -3'
miRNA:   3'- gCCGGCGuaGGua--Ga-CGucGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 50718 0.76 0.20376
Target:  5'- aCGGCCGCcccggcgGUCCAgCUGCcccGGCCCCGg- -3'
miRNA:   3'- -GCCGGCG-------UAGGUaGACG---UCGGGGCag -5'
29411 3' -60.7 NC_006151.1 + 50856 0.68 0.570289
Target:  5'- gCGGCCGCccUCCcgCgccccCGGaCCCCGUCc -3'
miRNA:   3'- -GCCGGCGu-AGGuaGac---GUC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 52073 0.75 0.219586
Target:  5'- gCGuGuaGCuGUCCGUCUGCAGCgCCGUCg -3'
miRNA:   3'- -GC-CggCG-UAGGUAGACGUCGgGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 53412 0.66 0.696916
Target:  5'- aCGGCCGUGagCAggUGCcgcccgagcagcccGGCCUCGUCg -3'
miRNA:   3'- -GCCGGCGUagGUagACG--------------UCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 53628 0.68 0.580196
Target:  5'- aGGUCGCG-CU-UCUGCAGCUcgcgcaCCGUCg -3'
miRNA:   3'- gCCGGCGUaGGuAGACGUCGG------GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 57247 0.66 0.670145
Target:  5'- gCGGCCucgGCGUCCG-C-GCGGCCCuCGa- -3'
miRNA:   3'- -GCCGG---CGUAGGUaGaCGUCGGG-GCag -5'
29411 3' -60.7 NC_006151.1 + 57433 0.69 0.521498
Target:  5'- aGcGUCaCGUCCGUCgcgGCGGCCCCcgcGUCg -3'
miRNA:   3'- gC-CGGcGUAGGUAGa--CGUCGGGG---CAG- -5'
29411 3' -60.7 NC_006151.1 + 57526 0.69 0.511926
Target:  5'- gCGGCCGCcUCCGgc-GCGGCCgcgggcaCGUCg -3'
miRNA:   3'- -GCCGGCGuAGGUagaCGUCGGg------GCAG- -5'
29411 3' -60.7 NC_006151.1 + 57613 0.66 0.680094
Target:  5'- uCGGCCGCggCCGccUCgacgGCgcgcgAGaCCCCGUUg -3'
miRNA:   3'- -GCCGGCGuaGGU--AGa---CG-----UC-GGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58265 0.66 0.680094
Target:  5'- gGGCCGCAgcaCCGUCUcGC-GCa-CGUCa -3'
miRNA:   3'- gCCGGCGUa--GGUAGA-CGuCGggGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58609 0.7 0.45618
Target:  5'- uGGCCGgGUCCGUCUcgaagcGCAGCggCUCGUa -3'
miRNA:   3'- gCCGGCgUAGGUAGA------CGUCG--GGGCAg -5'
29411 3' -60.7 NC_006151.1 + 58764 0.69 0.474415
Target:  5'- gCGGCCGCcgagcCCGUCcacgGC-GCCgCCGUCa -3'
miRNA:   3'- -GCCGGCGua---GGUAGa---CGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 58808 0.66 0.688027
Target:  5'- gCGcGCCGCGUacgcgc-CGGCCCCGUCg -3'
miRNA:   3'- -GC-CGGCGUAgguagacGUCGGGGCAG- -5'
29411 3' -60.7 NC_006151.1 + 59443 0.67 0.620113
Target:  5'- uCGGCCGCcgCCGccgCgaccGCGGCCgaGUCc -3'
miRNA:   3'- -GCCGGCGuaGGUa--Ga---CGUCGGggCAG- -5'
29411 3' -60.7 NC_006151.1 + 60656 0.67 0.600109
Target:  5'- cCGcGCCGCGUCCucgcucccGUC-GCcGCCgCCGUCc -3'
miRNA:   3'- -GC-CGGCGUAGG--------UAGaCGuCGG-GGCAG- -5'
29411 3' -60.7 NC_006151.1 + 61196 0.71 0.371168
Target:  5'- aGcGCCGCGgagagCCAUUUcaGCAGCgCCGUCg -3'
miRNA:   3'- gC-CGGCGUa----GGUAGA--CGUCGgGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.