miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 5' -58.1 NC_006151.1 + 111026 1.08 0.001785
Target:  5'- uGAGCCGGAGCAGAAUGUCCACGGGCAg -3'
miRNA:   3'- -CUCGGCCUCGUCUUACAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 130682 0.8 0.160861
Target:  5'- gGGGCgCGGcGCAGGAUGUCCGgGGGCc -3'
miRNA:   3'- -CUCG-GCCuCGUCUUACAGGUgCCCGu -5'
29411 5' -58.1 NC_006151.1 + 2934 0.77 0.233643
Target:  5'- cGAGCCGcGAGCAGAGguacUCCACGGcGCc -3'
miRNA:   3'- -CUCGGC-CUCGUCUUac--AGGUGCC-CGu -5'
29411 5' -58.1 NC_006151.1 + 27359 0.76 0.263455
Target:  5'- uGGGCCGGGGCccGGGcggGUCgACGGGCGa -3'
miRNA:   3'- -CUCGGCCUCG--UCUua-CAGgUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 81751 0.75 0.310278
Target:  5'- cGGCgCGGAGCug---GUCCGCGGGCGc -3'
miRNA:   3'- cUCG-GCCUCGucuuaCAGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 78109 0.74 0.345124
Target:  5'- uGGCCGGGGCGGAcgccauccugcggcGgg-CCGCGGGCGc -3'
miRNA:   3'- cUCGGCCUCGUCU--------------UacaGGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 3929 0.74 0.355246
Target:  5'- aGAGCgGGGGCAGGccGggcgcgggcUCCGCGGGCc -3'
miRNA:   3'- -CUCGgCCUCGUCUuaC---------AGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 130937 0.73 0.404612
Target:  5'- gGGGCgGGGGCGGcgggggGUCgCGCGGGCGc -3'
miRNA:   3'- -CUCGgCCUCGUCuua---CAG-GUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 4219 0.72 0.422002
Target:  5'- cGGCCGGGGCgcGGGcgGg-CGCGGGCAg -3'
miRNA:   3'- cUCGGCCUCG--UCUuaCagGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 60892 0.72 0.439835
Target:  5'- cAGCCGcgcGAGCAGGGcGUCCacGCGGGCc -3'
miRNA:   3'- cUCGGC---CUCGUCUUaCAGG--UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 22539 0.72 0.458089
Target:  5'- gGGGCCGGgucaGGCGGAGg--CCACGuGGCGg -3'
miRNA:   3'- -CUCGGCC----UCGUCUUacaGGUGC-CCGU- -5'
29411 5' -58.1 NC_006151.1 + 8611 0.72 0.467367
Target:  5'- gGGGCCGGuGCGGGugugaggGUCCuguGCGGGUg -3'
miRNA:   3'- -CUCGGCCuCGUCUua-----CAGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 78664 0.72 0.467367
Target:  5'- cGGCCGGGGCGcGggUG-CUggACGGGCu -3'
miRNA:   3'- cUCGGCCUCGU-CuuACaGG--UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 121686 0.71 0.483357
Target:  5'- cGGGCCgacccggccauggcGGAGCGGcggcucgugGcgGUCCugGGGCAg -3'
miRNA:   3'- -CUCGG--------------CCUCGUC---------UuaCAGGugCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 71634 0.71 0.486207
Target:  5'- -cGCCGGGGgGGAcgGUCgGgGGGCc -3'
miRNA:   3'- cuCGGCCUCgUCUuaCAGgUgCCCGu -5'
29411 5' -58.1 NC_006151.1 + 663 0.71 0.515117
Target:  5'- cGGCCGGGGCGGGc--UCCGCGGaucGCAu -3'
miRNA:   3'- cUCGGCCUCGUCUuacAGGUGCC---CGU- -5'
29411 5' -58.1 NC_006151.1 + 133636 0.7 0.544699
Target:  5'- cGGCCGGGGCGGug-GUCCG-GGuGCGa -3'
miRNA:   3'- cUCGGCCUCGUCuuaCAGGUgCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 118549 0.7 0.554685
Target:  5'- gGGGCgCGG-GCAcGGUGUCCaucaACGGGCAc -3'
miRNA:   3'- -CUCG-GCCuCGUcUUACAGG----UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 83326 0.7 0.554685
Target:  5'- aGGGCCGuGAGCAGGcgcgcGUCCACGuGCu -3'
miRNA:   3'- -CUCGGC-CUCGUCUua---CAGGUGCcCGu -5'
29411 5' -58.1 NC_006151.1 + 76687 0.7 0.554685
Target:  5'- gGAGCagGGGGgAGAGUGg-CGCGGGCGc -3'
miRNA:   3'- -CUCGg-CCUCgUCUUACagGUGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.