miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29411 5' -58.1 NC_006151.1 + 663 0.71 0.515117
Target:  5'- cGGCCGGGGCGGGc--UCCGCGGaucGCAu -3'
miRNA:   3'- cUCGGCCUCGUCUuacAGGUGCC---CGU- -5'
29411 5' -58.1 NC_006151.1 + 1979 0.7 0.574811
Target:  5'- gGGGCCGGAGaguCAGAGcagaGUCCGgcCGGGCc -3'
miRNA:   3'- -CUCGGCCUC---GUCUUa---CAGGU--GCCCGu -5'
29411 5' -58.1 NC_006151.1 + 2868 0.68 0.696941
Target:  5'- cGGCCGG-GCc----GUCCGCGGGCc -3'
miRNA:   3'- cUCGGCCuCGucuuaCAGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 2934 0.77 0.233643
Target:  5'- cGAGCCGcGAGCAGAGguacUCCACGGcGCc -3'
miRNA:   3'- -CUCGGC-CUCGUCUUac--AGGUGCC-CGu -5'
29411 5' -58.1 NC_006151.1 + 3131 0.67 0.746359
Target:  5'- aGGCCGGGcGCGGGGcGcCCucgGCGGGCu -3'
miRNA:   3'- cUCGGCCU-CGUCUUaCaGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 3253 0.66 0.802263
Target:  5'- -cGgCGGAGCGGGGcG-CCGCGGcGCGc -3'
miRNA:   3'- cuCgGCCUCGUCUUaCaGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 3428 0.68 0.666567
Target:  5'- cGGCCGGgacgcGGCGGAAgccgCCGuCGGGCGc -3'
miRNA:   3'- cUCGGCC-----UCGUCUUaca-GGU-GCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 3537 0.69 0.605287
Target:  5'- -cGCgGGAGCGGg--GUCCggaGCGGGCc -3'
miRNA:   3'- cuCGgCCUCGUCuuaCAGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 3929 0.74 0.355246
Target:  5'- aGAGCgGGGGCAGGccGggcgcgggcUCCGCGGGCc -3'
miRNA:   3'- -CUCGgCCUCGUCUuaC---------AGGUGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 4006 0.69 0.625716
Target:  5'- uGGCCGGGGCgaAGAggG-CCGCGGcGUAg -3'
miRNA:   3'- cUCGGCCUCG--UCUuaCaGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 4219 0.72 0.422002
Target:  5'- cGGCCGGGGCgcGGGcgGg-CGCGGGCAg -3'
miRNA:   3'- cUCGGCCUCG--UCUuaCagGUGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 4391 0.67 0.746359
Target:  5'- --cCCGGcGCGGGG-GUCCGCGGcGCGg -3'
miRNA:   3'- cucGGCCuCGUCUUaCAGGUGCC-CGU- -5'
29411 5' -58.1 NC_006151.1 + 5030 0.67 0.736639
Target:  5'- gGGGCCGGGGCcgGGGAgg-CCGCGG-CGg -3'
miRNA:   3'- -CUCGGCCUCG--UCUUacaGGUGCCcGU- -5'
29411 5' -58.1 NC_006151.1 + 6558 0.67 0.735661
Target:  5'- -cGCCGGAGCGGAGacgGUCgGauccccuCGGGUu -3'
miRNA:   3'- cuCGGCCUCGUCUUa--CAGgU-------GCCCGu -5'
29411 5' -58.1 NC_006151.1 + 8276 0.7 0.564725
Target:  5'- --uCCGGGGgaaAGAGUGUCCccgcGCGGGCGc -3'
miRNA:   3'- cucGGCCUCg--UCUUACAGG----UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 8611 0.72 0.467367
Target:  5'- gGGGCCGGuGCGGGugugaggGUCCuguGCGGGUg -3'
miRNA:   3'- -CUCGGCCuCGUCUua-----CAGG---UGCCCGu -5'
29411 5' -58.1 NC_006151.1 + 9041 0.67 0.70697
Target:  5'- -cGCCGGGGCGccccGcGUGcUCCGgGGGCGc -3'
miRNA:   3'- cuCGGCCUCGU----CuUAC-AGGUgCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 10053 0.69 0.595099
Target:  5'- gGAGCgGGAGCGGcucccgaGUCCgggaaggaaagGCGGGCGg -3'
miRNA:   3'- -CUCGgCCUCGUCuua----CAGG-----------UGCCCGU- -5'
29411 5' -58.1 NC_006151.1 + 18130 0.66 0.784149
Target:  5'- -cGCUGGGGUcGAacGUGUCCAUgucggcggGGGCGg -3'
miRNA:   3'- cuCGGCCUCGuCU--UACAGGUG--------CCCGU- -5'
29411 5' -58.1 NC_006151.1 + 18306 0.69 0.595099
Target:  5'- aAGCCGGAGCGGGGcGccUCCucgGGGCGc -3'
miRNA:   3'- cUCGGCCUCGUCUUaC--AGGug-CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.