miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 3' -61.5 NC_006151.1 + 109019 1.09 0.000934
Target:  5'- cCGGCGACUGCUCCAACGGGCCCACCGg -3'
miRNA:   3'- -GCCGCUGACGAGGUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 81750 0.78 0.147569
Target:  5'- gCGGCGcggaGCUGgUCC-GCGGGCgCCACCGg -3'
miRNA:   3'- -GCCGC----UGACgAGGuUGCCCG-GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 86182 0.76 0.197614
Target:  5'- uGGCcgccgcGCUGCccCCGGCGGGCCCGCUGc -3'
miRNA:   3'- gCCGc-----UGACGa-GGUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 15894 0.75 0.217339
Target:  5'- gGGgGACgcgcGCcCCGACGcGGCCCGCCGc -3'
miRNA:   3'- gCCgCUGa---CGaGGUUGC-CCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 96809 0.75 0.222527
Target:  5'- gGGCGcGCggGCUUuuagCGGCGGGCCCGCCa -3'
miRNA:   3'- gCCGC-UGa-CGAG----GUUGCCCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 54122 0.75 0.233218
Target:  5'- gCGGCGGCUGCg--GACGGGCUCugCc -3'
miRNA:   3'- -GCCGCUGACGaggUUGCCCGGGugGc -5'
29412 3' -61.5 NC_006151.1 + 3945 0.74 0.238725
Target:  5'- gGGCG-CggGCUCC-GCGGGCCCggGCCGc -3'
miRNA:   3'- gCCGCuGa-CGAGGuUGCCCGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 71330 0.74 0.244339
Target:  5'- gCGGCGGCUGCgCCGACGaccucgccguGGCCCucgucaugGCCGu -3'
miRNA:   3'- -GCCGCUGACGaGGUUGC----------CCGGG--------UGGC- -5'
29412 3' -61.5 NC_006151.1 + 28233 0.74 0.255896
Target:  5'- aGGgGGCcGggCCGACGGGCCCAUUGg -3'
miRNA:   3'- gCCgCUGaCgaGGUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 735 0.74 0.261841
Target:  5'- gCGGgGGCUuccGCUCC-GCGGcGCCCGCCc -3'
miRNA:   3'- -GCCgCUGA---CGAGGuUGCC-CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 100811 0.73 0.274067
Target:  5'- gGGCGACgGCga-GGCGGGCCCcgacGCCGu -3'
miRNA:   3'- gCCGCUGaCGaggUUGCCCGGG----UGGC- -5'
29412 3' -61.5 NC_006151.1 + 88087 0.73 0.286746
Target:  5'- aGGCGGCagGUguagUCGACGGGCCCGUCGa -3'
miRNA:   3'- gCCGCUGa-CGa---GGUUGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 66398 0.73 0.293257
Target:  5'- aGcGCGACUGCgCCGAgGaGGCCCGCUu -3'
miRNA:   3'- gC-CGCUGACGaGGUUgC-CCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 87976 0.73 0.297883
Target:  5'- cCGGCGaugacgacgaucauGCUGCUCaCGACGGGCCaGCUc -3'
miRNA:   3'- -GCCGC--------------UGACGAG-GUUGCCCGGgUGGc -5'
29412 3' -61.5 NC_006151.1 + 65828 0.73 0.299883
Target:  5'- gGGCGGCcGCgCCAGCGcGGCCCGgCu -3'
miRNA:   3'- gCCGCUGaCGaGGUUGC-CCGGGUgGc -5'
29412 3' -61.5 NC_006151.1 + 68017 0.73 0.299883
Target:  5'- uCGGCGGCguccaGgUCCAGgcGGCCCGCCGg -3'
miRNA:   3'- -GCCGCUGa----CgAGGUUgcCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 114113 0.73 0.299883
Target:  5'- uCGGCGGCUGCUgcCCcACGuGCgCCGCCGc -3'
miRNA:   3'- -GCCGCUGACGA--GGuUGCcCG-GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 125001 0.73 0.306624
Target:  5'- gGGCGACUGCgUCCuccGCGaGGCCUcggagGCCa -3'
miRNA:   3'- gCCGCUGACG-AGGu--UGC-CCGGG-----UGGc -5'
29412 3' -61.5 NC_006151.1 + 137914 0.73 0.31348
Target:  5'- aCGGCGGCgGCUgCC-ACGGGCgCCugCu -3'
miRNA:   3'- -GCCGCUGaCGA-GGuUGCCCG-GGugGc -5'
29412 3' -61.5 NC_006151.1 + 57523 0.73 0.31348
Target:  5'- gCGGCGGCcGcCUCCGGCGcGGCCgcgggcacguCGCCGa -3'
miRNA:   3'- -GCCGCUGaC-GAGGUUGC-CCGG----------GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.