miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 3' -61.5 NC_006151.1 + 735 0.74 0.261841
Target:  5'- gCGGgGGCUuccGCUCC-GCGGcGCCCGCCc -3'
miRNA:   3'- -GCCgCUGA---CGAGGuUGCC-CGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 2300 0.69 0.514649
Target:  5'- gCGGCGACgGCgcccggggucagcaCCAGCGGGgCgGCCu -3'
miRNA:   3'- -GCCGCUGaCGa-------------GGUUGCCCgGgUGGc -5'
29412 3' -61.5 NC_006151.1 + 3456 0.66 0.695626
Target:  5'- gGGCGcggGgUGCUCgGGCauGGGCCCgagcgggcGCCGg -3'
miRNA:   3'- gCCGC---UgACGAGgUUG--CCCGGG--------UGGC- -5'
29412 3' -61.5 NC_006151.1 + 3576 0.67 0.627006
Target:  5'- gCGGCGcUUGCgCCG--GGGCCC-CCGg -3'
miRNA:   3'- -GCCGCuGACGaGGUugCCCGGGuGGC- -5'
29412 3' -61.5 NC_006151.1 + 3945 0.74 0.238725
Target:  5'- gGGCG-CggGCUCC-GCGGGCCCggGCCGc -3'
miRNA:   3'- gCCGCuGa-CGAGGuUGCCCGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 4487 0.67 0.58771
Target:  5'- gCGGCGGCUcauggCC-ACGGcGCUCACCGc -3'
miRNA:   3'- -GCCGCUGAcga--GGuUGCC-CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 5371 0.68 0.548886
Target:  5'- cCGGCGggGCUGuCUCU-GCGGGggcgcCCCGCCGu -3'
miRNA:   3'- -GCCGC--UGAC-GAGGuUGCCC-----GGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 5657 0.71 0.372473
Target:  5'- cCGGCGGCgggggagGCUggggaAGCGGGCCCccGCCGu -3'
miRNA:   3'- -GCCGCUGa------CGAgg---UUGCCCGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 5746 0.66 0.656539
Target:  5'- aGGCcGC-GCcgCCGGCccGGGCUCACCGa -3'
miRNA:   3'- gCCGcUGaCGa-GGUUG--CCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 7026 0.66 0.685908
Target:  5'- gCGGCGGCcaucucgGCUcgcccgggCCAAUGGGCgCGCgGa -3'
miRNA:   3'- -GCCGCUGa------CGA--------GGUUGCCCGgGUGgC- -5'
29412 3' -61.5 NC_006151.1 + 7662 0.72 0.320452
Target:  5'- uCGGCGcGC-GCUCCGAgGGcGCCCcaGCCGg -3'
miRNA:   3'- -GCCGC-UGaCGAGGUUgCC-CGGG--UGGC- -5'
29412 3' -61.5 NC_006151.1 + 9046 0.71 0.364699
Target:  5'- gGGCGccccGCgUGCUCCGGgGGcGCCgGCCGg -3'
miRNA:   3'- gCCGC----UG-ACGAGGUUgCC-CGGgUGGC- -5'
29412 3' -61.5 NC_006151.1 + 10469 0.66 0.650639
Target:  5'- gCGGCGGCggugaaggaggagaGCcgcCCGGCGcGcGCCCGCCGc -3'
miRNA:   3'- -GCCGCUGa-------------CGa--GGUUGC-C-CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 11335 0.67 0.627006
Target:  5'- gGGCGAUaccGCgcgggCCGcccGCGGGCgCUACCGc -3'
miRNA:   3'- gCCGCUGa--CGa----GGU---UGCCCG-GGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 13677 0.67 0.627006
Target:  5'- cCGGgGAC-GCgccggCCAauGCGGGCUC-CCGg -3'
miRNA:   3'- -GCCgCUGaCGa----GGU--UGCCCGGGuGGC- -5'
29412 3' -61.5 NC_006151.1 + 15894 0.75 0.217339
Target:  5'- gGGgGACgcgcGCcCCGACGcGGCCCGCCGc -3'
miRNA:   3'- gCCgCUGa---CGaGGUUGC-CCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 17946 0.71 0.364699
Target:  5'- gCGGCGGC-GuCUCCGGCGcccGCCUGCCGg -3'
miRNA:   3'- -GCCGCUGaC-GAGGUUGCc--CGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 18231 0.68 0.558526
Target:  5'- aGGCGGCUgGCggucacgCCAuaguUGGGCCCAUUc -3'
miRNA:   3'- gCCGCUGA-CGa------GGUu---GCCCGGGUGGc -5'
29412 3' -61.5 NC_006151.1 + 19026 0.7 0.412158
Target:  5'- cCGGCGaggugaaGCUGCa-CGcCGGGUCCACCGg -3'
miRNA:   3'- -GCCGC-------UGACGagGUuGCCCGGGUGGC- -5'
29412 3' -61.5 NC_006151.1 + 20120 0.69 0.474046
Target:  5'- cCGGCGACgggGCUggggGGCGGGCgCCGCgGg -3'
miRNA:   3'- -GCCGCUGa--CGAgg--UUGCCCG-GGUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.