miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 5' -57.5 NC_006151.1 + 109053 1.1 0.001207
Target:  5'- cAGCAGCAGCAGCUACAGCAGCCGUCCc -3'
miRNA:   3'- -UCGUCGUCGUCGAUGUCGUCGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 130883 0.9 0.031963
Target:  5'- gGGCGGCGGCGGUggagGCGGCGGCCGUCg -3'
miRNA:   3'- -UCGUCGUCGUCGa---UGUCGUCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 136927 0.87 0.055428
Target:  5'- gAGCAGCAGCAGCcgggcgccgACGGC-GCCGUCCu -3'
miRNA:   3'- -UCGUCGUCGUCGa--------UGUCGuCGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 87477 0.85 0.068926
Target:  5'- cAGCAGCGGCAGCcGCcGCGGCCGcCCc -3'
miRNA:   3'- -UCGUCGUCGUCGaUGuCGUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 50583 0.83 0.095251
Target:  5'- cAGCAGCAGCAGCaacaACAGCAGCgGgccCCg -3'
miRNA:   3'- -UCGUCGUCGUCGa---UGUCGUCGgCa--GG- -5'
29412 5' -57.5 NC_006151.1 + 118874 0.82 0.105974
Target:  5'- gAGCAGCGGCGGCgcgGCGGCgacgcGGCCG-CCg -3'
miRNA:   3'- -UCGUCGUCGUCGa--UGUCG-----UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 67812 0.82 0.105974
Target:  5'- cGCGGCAGCAGCUGCcGCcGUCGUCg -3'
miRNA:   3'- uCGUCGUCGUCGAUGuCGuCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 139694 0.82 0.108827
Target:  5'- cGGCGGCGGCAGCaACAGCAGCagcaGgCCa -3'
miRNA:   3'- -UCGUCGUCGUCGaUGUCGUCGg---CaGG- -5'
29412 5' -57.5 NC_006151.1 + 128046 0.82 0.120974
Target:  5'- cGGCAGCGGCGGCaGCGGCGGCUG-Cg -3'
miRNA:   3'- -UCGUCGUCGUCGaUGUCGUCGGCaGg -5'
29412 5' -57.5 NC_006151.1 + 59745 0.8 0.145302
Target:  5'- cGCGcGCAGCAGCUcCuGCAGCuCGUCCu -3'
miRNA:   3'- uCGU-CGUCGUCGAuGuCGUCG-GCAGG- -5'
29412 5' -57.5 NC_006151.1 + 59418 0.8 0.153034
Target:  5'- gAGCAGCAGCGGCgcCAGCucggcgucGGCCG-CCg -3'
miRNA:   3'- -UCGUCGUCGUCGauGUCG--------UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 109317 0.8 0.153034
Target:  5'- cGGCGGCAGCAGCgGCGGCGGCaacaaCCa -3'
miRNA:   3'- -UCGUCGUCGUCGaUGUCGUCGgca--GG- -5'
29412 5' -57.5 NC_006151.1 + 83055 0.8 0.161138
Target:  5'- cAGCGGCAGCAGCU-UGGCcacgAGCgCGUCCa -3'
miRNA:   3'- -UCGUCGUCGUCGAuGUCG----UCG-GCAGG- -5'
29412 5' -57.5 NC_006151.1 + 48655 0.79 0.174018
Target:  5'- uGCAGCAGCAGCccccgccgggGCAGgGGCCGgggCCu -3'
miRNA:   3'- uCGUCGUCGUCGa---------UGUCgUCGGCa--GG- -5'
29412 5' -57.5 NC_006151.1 + 133375 0.79 0.174018
Target:  5'- uGGUGGUGGCGGCcgggGCGGCGGCCGgggCCg -3'
miRNA:   3'- -UCGUCGUCGUCGa---UGUCGUCGGCa--GG- -5'
29412 5' -57.5 NC_006151.1 + 139516 0.79 0.178512
Target:  5'- cAGCGGCaacAGCAGCgGCAGCgAGgCGUCCa -3'
miRNA:   3'- -UCGUCG---UCGUCGaUGUCG-UCgGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 60876 0.79 0.187334
Target:  5'- cGCGGCAGCcGC-GCAGCAGCCGcgcgagcagggcgUCCa -3'
miRNA:   3'- uCGUCGUCGuCGaUGUCGUCGGC-------------AGG- -5'
29412 5' -57.5 NC_006151.1 + 71774 0.79 0.187809
Target:  5'- uGCGGCAGCGGCgGCGGgGGCUG-CCg -3'
miRNA:   3'- uCGUCGUCGUCGaUGUCgUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 105229 0.78 0.202552
Target:  5'- uGCGGCAGCGGCUgACGGCcGCCGaggucgCCu -3'
miRNA:   3'- uCGUCGUCGUCGA-UGUCGuCGGCa-----GG- -5'
29412 5' -57.5 NC_006151.1 + 69987 0.78 0.203061
Target:  5'- cAGCGGCGGCAGCgucagcacgcucucgACGGCGcCCGUCUg -3'
miRNA:   3'- -UCGUCGUCGUCGa--------------UGUCGUcGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.