miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29412 5' -57.5 NC_006151.1 + 2536 0.68 0.685658
Target:  5'- gAGC-GCGG-AGCgcugGCGggccauguccuuGCAGCCGUCCa -3'
miRNA:   3'- -UCGuCGUCgUCGa---UGU------------CGUCGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 2606 0.68 0.66511
Target:  5'- cGCGGCGGCAGCgggACcGgGGuCCGgggCCc -3'
miRNA:   3'- uCGUCGUCGUCGa--UGuCgUC-GGCa--GG- -5'
29412 5' -57.5 NC_006151.1 + 2672 0.72 0.473226
Target:  5'- uGGCGGCAGaGGC-GCAGCGGCuCGgccCCg -3'
miRNA:   3'- -UCGUCGUCgUCGaUGUCGUCG-GCa--GG- -5'
29412 5' -57.5 NC_006151.1 + 3089 0.67 0.745914
Target:  5'- aGGCGGCgAGCAGCgccgAGaGGCCG-CCg -3'
miRNA:   3'- -UCGUCG-UCGUCGaug-UCgUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 3743 0.66 0.820201
Target:  5'- cGGCGGCGGgggAGCUGgcGUAGCCGgaggagCCg -3'
miRNA:   3'- -UCGUCGUCg--UCGAUguCGUCGGCa-----GG- -5'
29412 5' -57.5 NC_006151.1 + 3966 0.69 0.644453
Target:  5'- gGGCcgcGCGGCGGCcuCGGCgAGCCGgCCg -3'
miRNA:   3'- -UCGu--CGUCGUCGauGUCG-UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 4169 0.66 0.820201
Target:  5'- gAGC-GCgAGCAGC----GCGGCCGUCa -3'
miRNA:   3'- -UCGuCG-UCGUCGauguCGUCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 4279 0.66 0.793412
Target:  5'- cGCcGCGGCAgGCcaggAC-GCAGgCGUCCg -3'
miRNA:   3'- uCGuCGUCGU-CGa---UGuCGUCgGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 4483 0.66 0.77385
Target:  5'- cGUAGCGGCGGCUcauggccACGGC-GCUcaCCg -3'
miRNA:   3'- uCGUCGUCGUCGA-------UGUCGuCGGcaGG- -5'
29412 5' -57.5 NC_006151.1 + 4568 0.69 0.622721
Target:  5'- cGGCAGCGGCGgggucacGCUGCcggugaugaAGgAGCCGUggCCg -3'
miRNA:   3'- -UCGUCGUCGU-------CGAUG---------UCgUCGGCA--GG- -5'
29412 5' -57.5 NC_006151.1 + 4801 0.68 0.685658
Target:  5'- cGCGGUAGCgGGCcGCGGCcuggcggacGUCGUCCu -3'
miRNA:   3'- uCGUCGUCG-UCGaUGUCGu--------CGGCAGG- -5'
29412 5' -57.5 NC_006151.1 + 4864 0.66 0.802503
Target:  5'- cGGCGccGCcGUAGCggAC-GCGGCCGUCg -3'
miRNA:   3'- -UCGU--CGuCGUCGa-UGuCGUCGGCAGg -5'
29412 5' -57.5 NC_006151.1 + 4934 0.68 0.66511
Target:  5'- gAGCAGCGGCccgucGGUcgGCGGgGGcCCGUCg -3'
miRNA:   3'- -UCGUCGUCG-----UCGa-UGUCgUC-GGCAGg -5'
29412 5' -57.5 NC_006151.1 + 6140 0.68 0.66511
Target:  5'- cGGCcGCGGCcGCgaggACGGCGGCCucggCCu -3'
miRNA:   3'- -UCGuCGUCGuCGa---UGUCGUCGGca--GG- -5'
29412 5' -57.5 NC_006151.1 + 6294 0.69 0.613413
Target:  5'- cGCGGCGGCGGCcgcCAGgAGCUGgCUg -3'
miRNA:   3'- uCGUCGUCGUCGau-GUCgUCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 10012 0.72 0.436033
Target:  5'- gAGCGGCGGCGGCggucGCcGCGGCCa--- -3'
miRNA:   3'- -UCGUCGUCGUCGa---UGuCGUCGGcagg -5'
29412 5' -57.5 NC_006151.1 + 10202 0.72 0.473226
Target:  5'- cGGCgcgGGCGGCGGCUGCagaGGCGGCUG-Cg -3'
miRNA:   3'- -UCG---UCGUCGUCGAUG---UCGUCGGCaGg -5'
29412 5' -57.5 NC_006151.1 + 10468 0.68 0.685658
Target:  5'- cGCGGCGGCGGUgaaGGaggagAGCCGcCCg -3'
miRNA:   3'- uCGUCGUCGUCGaugUCg----UCGGCaGG- -5'
29412 5' -57.5 NC_006151.1 + 10571 0.67 0.765286
Target:  5'- uGGC-GCGGcCGGCU-CGGCGGCCcggCCc -3'
miRNA:   3'- -UCGuCGUC-GUCGAuGUCGUCGGca-GG- -5'
29412 5' -57.5 NC_006151.1 + 11824 0.73 0.427
Target:  5'- gGGCGGCGGCGGCU-C-GCccuCCGUCCu -3'
miRNA:   3'- -UCGUCGUCGUCGAuGuCGuc-GGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.