miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29413 5' -63.9 NC_006151.1 + 99095 0.68 0.431962
Target:  5'- cGGCgCCUGCGCaCGGACCaGGGcGUgCUg- -3'
miRNA:   3'- -CCG-GGGCGCG-GUCUGGcCCC-CA-GAag -5'
29413 5' -63.9 NC_006151.1 + 137514 0.68 0.431962
Target:  5'- uGGCgCCGCGCCgggcgacgaGGACUGGGcGGaCUg- -3'
miRNA:   3'- -CCGgGGCGCGG---------UCUGGCCC-CCaGAag -5'
29413 5' -63.9 NC_006151.1 + 4372 0.68 0.431962
Target:  5'- gGGCCUCGacgguCGCCuccccGGCgCGGGGGUCcgCg -3'
miRNA:   3'- -CCGGGGC-----GCGGu----CUG-GCCCCCAGaaG- -5'
29413 5' -63.9 NC_006151.1 + 8178 0.68 0.431962
Target:  5'- uGGaCCUCGgGCCGGGaccCCGGGGGcgCUcCg -3'
miRNA:   3'- -CC-GGGGCgCGGUCU---GGCCCCCa-GAaG- -5'
29413 5' -63.9 NC_006151.1 + 70124 0.68 0.42353
Target:  5'- cGCCCgCGCGCCgcAGGa-GGGGGUCc-- -3'
miRNA:   3'- cCGGG-GCGCGG--UCUggCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 20116 0.68 0.415197
Target:  5'- cGCCCCgGCGaCgGGGCUGGGGGg---- -3'
miRNA:   3'- cCGGGG-CGC-GgUCUGGCCCCCagaag -5'
29413 5' -63.9 NC_006151.1 + 39133 0.69 0.406966
Target:  5'- cGCCCCGCGCCcGGCCuGGGa----- -3'
miRNA:   3'- cCGGGGCGCGGuCUGGcCCCcagaag -5'
29413 5' -63.9 NC_006151.1 + 88860 0.69 0.406966
Target:  5'- cGCuCCCGCGggagcuCCGGGCgCGGGGGcUCgUCa -3'
miRNA:   3'- cCG-GGGCGC------GGUCUG-GCCCCC-AGaAG- -5'
29413 5' -63.9 NC_006151.1 + 36570 0.69 0.398837
Target:  5'- uGGCCgCaGCGCCGGcACggCGGGGGcccgCUUCc -3'
miRNA:   3'- -CCGGgG-CGCGGUC-UG--GCCCCCa---GAAG- -5'
29413 5' -63.9 NC_006151.1 + 18756 0.69 0.388427
Target:  5'- gGGCCCCacggggugcccgggGC-CCGGGCCGGGGccGUCa-- -3'
miRNA:   3'- -CCGGGG--------------CGcGGUCUGGCCCC--CAGaag -5'
29413 5' -63.9 NC_006151.1 + 54609 0.69 0.367384
Target:  5'- uGGUCCCgguGCGCCGGGcgcgccCCGGGGGgaagCggCg -3'
miRNA:   3'- -CCGGGG---CGCGGUCU------GGCCCCCa---GaaG- -5'
29413 5' -63.9 NC_006151.1 + 8372 0.69 0.367384
Target:  5'- aGGCCCC-CGCCc--CCGGGGGgg-UCc -3'
miRNA:   3'- -CCGGGGcGCGGucuGGCCCCCagaAG- -5'
29413 5' -63.9 NC_006151.1 + 142274 0.69 0.36662
Target:  5'- cGCCCCGUcccggcgGCCAGACCGGccGGGa---- -3'
miRNA:   3'- cCGGGGCG-------CGGUCUGGCC--CCCagaag -5'
29413 5' -63.9 NC_006151.1 + 27217 0.69 0.359792
Target:  5'- gGGCCCCGCGCgCcguGGACgCGcaccuccucGGGGUCg-- -3'
miRNA:   3'- -CCGGGGCGCG-G---UCUG-GC---------CCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 136979 0.69 0.359792
Target:  5'- uGGCCgCCGCGCCGGG-CGGcGGG-Cg-- -3'
miRNA:   3'- -CCGG-GGCGCGGUCUgGCC-CCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 38657 0.69 0.359792
Target:  5'- cGGCCaCCGCGacgacgaagaGGACCGGGGGcCc-- -3'
miRNA:   3'- -CCGG-GGCGCgg--------UCUGGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 91927 0.7 0.35231
Target:  5'- aGGCCaucuCCaCGCC--GCCGGGGGUCcUCa -3'
miRNA:   3'- -CCGG----GGcGCGGucUGGCCCCCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 89162 0.7 0.35231
Target:  5'- cGCCUCGgGCgaggCGGGCgCGGGGGUCg-- -3'
miRNA:   3'- cCGGGGCgCG----GUCUG-GCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 69371 0.7 0.35231
Target:  5'- aGCCagucgaGCGCCGucagcGGCCGGGGGUCc-- -3'
miRNA:   3'- cCGGgg----CGCGGU-----CUGGCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 61346 0.7 0.35231
Target:  5'- cGGCUgCGCaCCAcGGCCGGGaGGUCg-- -3'
miRNA:   3'- -CCGGgGCGcGGU-CUGGCCC-CCAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.