miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29413 5' -63.9 NC_006151.1 + 108918 1.1 0.000518
Target:  5'- cGGCCCCGCGCCAGACCGGGGGUCUUCc -3'
miRNA:   3'- -CCGGGGCGCGGUCUGGCCCCCAGAAG- -5'
29413 5' -63.9 NC_006151.1 + 98503 0.8 0.067854
Target:  5'- cGGCCCCGCuGCUGGAgcucCUGGGGGUCgUCa -3'
miRNA:   3'- -CCGGGGCG-CGGUCU----GGCCCCCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 2181 0.8 0.073236
Target:  5'- cGGCCCCgGCGCCcgaggcccccgcGGGCCGGuGGGUCUcCa -3'
miRNA:   3'- -CCGGGG-CGCGG------------UCUGGCC-CCCAGAaG- -5'
29413 5' -63.9 NC_006151.1 + 38911 0.75 0.154574
Target:  5'- aGGUggCCCGCGCCucguGGACCaGGaGGUCUUCc -3'
miRNA:   3'- -CCG--GGGCGCGG----UCUGGcCC-CCAGAAG- -5'
29413 5' -63.9 NC_006151.1 + 138631 0.75 0.170238
Target:  5'- cGCCgggggCGCGCCGGACUGGGaGGcCUUCa -3'
miRNA:   3'- cCGGg----GCGCGGUCUGGCCC-CCaGAAG- -5'
29413 5' -63.9 NC_006151.1 + 68218 0.74 0.196393
Target:  5'- cGGCCCUGCGCCAGGCgcagcgcccgCGGGcGcGUCa-- -3'
miRNA:   3'- -CCGGGGCGCGGUCUG----------GCCC-C-CAGaag -5'
29413 5' -63.9 NC_006151.1 + 21468 0.74 0.198256
Target:  5'- uGGUCCCGCGUCGccggcucgggcaggcGGCCGGGGGgcgCgggcgUCa -3'
miRNA:   3'- -CCGGGGCGCGGU---------------CUGGCCCCCa--Ga----AG- -5'
29413 5' -63.9 NC_006151.1 + 37466 0.74 0.20108
Target:  5'- cGGCCcgcuaCCGCGCCGcGGCCGGGcccgugcccGUCUUCa -3'
miRNA:   3'- -CCGG-----GGCGCGGU-CUGGCCCc--------CAGAAG- -5'
29413 5' -63.9 NC_006151.1 + 11565 0.74 0.20108
Target:  5'- cGGCCCCGacaccccccCGCCc-GCCGGGGGaggCUUCc -3'
miRNA:   3'- -CCGGGGC---------GCGGucUGGCCCCCa--GAAG- -5'
29413 5' -63.9 NC_006151.1 + 141804 0.73 0.205381
Target:  5'- cGGUCCCGCcccgagggcacggGCCGGuuCGGGGGUCc-- -3'
miRNA:   3'- -CCGGGGCG-------------CGGUCugGCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 31923 0.72 0.242162
Target:  5'- cGUCCUGCGUCacgGGACCGGGGGg--UCc -3'
miRNA:   3'- cCGGGGCGCGG---UCUGGCCCCCagaAG- -5'
29413 5' -63.9 NC_006151.1 + 33938 0.72 0.253469
Target:  5'- aGGCCCgCGCGCC---CCGGGGGcUCg-- -3'
miRNA:   3'- -CCGGG-GCGCGGucuGGCCCCC-AGaag -5'
29413 5' -63.9 NC_006151.1 + 139632 0.72 0.253469
Target:  5'- gGGCCauCCgGCGCCGG-CgCGGGGGUCg-- -3'
miRNA:   3'- -CCGG--GG-CGCGGUCuG-GCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 66890 0.72 0.259284
Target:  5'- cGGCCCCGCGCCGGaggacgccGCCGaGGaGGg---- -3'
miRNA:   3'- -CCGGGGCGCGGUC--------UGGC-CC-CCagaag -5'
29413 5' -63.9 NC_006151.1 + 27290 0.72 0.265208
Target:  5'- aGCgCCCGCGCUugggGGGCgUGGGGGUCg-- -3'
miRNA:   3'- cCG-GGGCGCGG----UCUG-GCCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 64616 0.72 0.265208
Target:  5'- cGGCgCCGCGCCGccGGCCGcGGGGcgCggCg -3'
miRNA:   3'- -CCGgGGCGCGGU--CUGGC-CCCCa-GaaG- -5'
29413 5' -63.9 NC_006151.1 + 23398 0.71 0.27124
Target:  5'- aGCaCCCGCGCCAGcGCUGGuGGUCg-- -3'
miRNA:   3'- cCG-GGGCGCGGUC-UGGCCcCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 64063 0.71 0.277383
Target:  5'- aGGCCCCGaccauGCCGGugCGcGGGUCc-- -3'
miRNA:   3'- -CCGGGGCg----CGGUCugGCcCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 109458 0.71 0.283636
Target:  5'- cGGCCCCGaCGCCGGAgCGGcacGGGg---- -3'
miRNA:   3'- -CCGGGGC-GCGGUCUgGCC---CCCagaag -5'
29413 5' -63.9 NC_006151.1 + 52493 0.71 0.296475
Target:  5'- cGGCCUCggGCGCCAGcCCGGGGcG-CUg- -3'
miRNA:   3'- -CCGGGG--CGCGGUCuGGCCCC-CaGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.