miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29413 5' -63.9 NC_006151.1 + 705 0.7 0.330531
Target:  5'- uGCCCCuucCGUCGcACCGGGGGUCcgCg -3'
miRNA:   3'- cCGGGGc--GCGGUcUGGCCCCCAGaaG- -5'
29413 5' -63.9 NC_006151.1 + 1740 0.7 0.337679
Target:  5'- cGCCgCCGCaGCCAccuccGGCCGGGGGaUCcgCg -3'
miRNA:   3'- cCGG-GGCG-CGGU-----CUGGCCCCC-AGaaG- -5'
29413 5' -63.9 NC_006151.1 + 2181 0.8 0.073236
Target:  5'- cGGCCCCgGCGCCcgaggcccccgcGGGCCGGuGGGUCUcCa -3'
miRNA:   3'- -CCGGGG-CGCGG------------UCUGGCC-CCCAGAaG- -5'
29413 5' -63.9 NC_006151.1 + 2289 0.67 0.474639
Target:  5'- gGGCgCCCGCGgCGGcgacggcGCCcGGGGUCa-- -3'
miRNA:   3'- -CCG-GGGCGCgGUC-------UGGcCCCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 3109 0.66 0.556031
Target:  5'- aGGCCgCCGCggcgcgggucccagGCCGGGCgCGGGGcGcCcUCg -3'
miRNA:   3'- -CCGG-GGCG--------------CGGUCUG-GCCCC-CaGaAG- -5'
29413 5' -63.9 NC_006151.1 + 3477 0.67 0.5027
Target:  5'- gGGCCCgagcggGCGCCGGAgCCGGucGUCcUCg -3'
miRNA:   3'- -CCGGGg-----CGCGGUCU-GGCCccCAGaAG- -5'
29413 5' -63.9 NC_006151.1 + 3915 0.67 0.466639
Target:  5'- gGGCugCUCGgGCCAGAgCGGGGG-Ca-- -3'
miRNA:   3'- -CCG--GGGCgCGGUCUgGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 4128 0.66 0.521183
Target:  5'- uGCCgCCGCucgGCCGGGCCGgccccGGGGaUCgcgUCg -3'
miRNA:   3'- cCGG-GGCG---CGGUCUGGC-----CCCC-AGa--AG- -5'
29413 5' -63.9 NC_006151.1 + 4372 0.68 0.431962
Target:  5'- gGGCCUCGacgguCGCCuccccGGCgCGGGGGUCcgCg -3'
miRNA:   3'- -CCGGGGC-----GCGGu----CUG-GCCCCCAGaaG- -5'
29413 5' -63.9 NC_006151.1 + 4864 0.67 0.483608
Target:  5'- cGGCgCCGCcguagcggacgcgGCCGucGGCCGGaGGGUCg-- -3'
miRNA:   3'- -CCGgGGCG-------------CGGU--CUGGCC-CCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 5119 0.68 0.461344
Target:  5'- cGGCCCgGCgcgggcgaguggggcGCCGGGCCGGacuccuucGUCUUCu -3'
miRNA:   3'- -CCGGGgCG---------------CGGUCUGGCCcc------CAGAAG- -5'
29413 5' -63.9 NC_006151.1 + 5746 0.66 0.558888
Target:  5'- aGGCCgCGcCGCCGGcCCGGgcucaccgaccGGGUCc-- -3'
miRNA:   3'- -CCGGgGC-GCGGUCuGGCC-----------CCCAGaag -5'
29413 5' -63.9 NC_006151.1 + 5886 0.67 0.509137
Target:  5'- gGGCCCCG-GCCucuGCCGcugcgagugcugccGGGGUCggCg -3'
miRNA:   3'- -CCGGGGCgCGGuc-UGGC--------------CCCCAGaaG- -5'
29413 5' -63.9 NC_006151.1 + 8178 0.68 0.431962
Target:  5'- uGGaCCUCGgGCCGGGaccCCGGGGGcgCUcCg -3'
miRNA:   3'- -CC-GGGGCgCGGUCU---GGCCCCCa-GAaG- -5'
29413 5' -63.9 NC_006151.1 + 8253 0.68 0.457833
Target:  5'- gGGCCggCGCGCCGGGacgccccuCCGGGGGa---- -3'
miRNA:   3'- -CCGGg-GCGCGGUCU--------GGCCCCCagaag -5'
29413 5' -63.9 NC_006151.1 + 8372 0.69 0.367384
Target:  5'- aGGCCCC-CGCCc--CCGGGGGgg-UCc -3'
miRNA:   3'- -CCGGGGcGCGGucuGGCCCCCagaAG- -5'
29413 5' -63.9 NC_006151.1 + 9049 0.67 0.5027
Target:  5'- cGCCCCGCGUgcu-CCGGGGG-Cg-- -3'
miRNA:   3'- cCGGGGCGCGgucuGGCCCCCaGaag -5'
29413 5' -63.9 NC_006151.1 + 10872 0.66 0.549381
Target:  5'- cGGCCCCccggcuugGUGCCGGAgaaaaGGGGGUg--- -3'
miRNA:   3'- -CCGGGG--------CGCGGUCUgg---CCCCCAgaag -5'
29413 5' -63.9 NC_006151.1 + 11565 0.74 0.20108
Target:  5'- cGGCCCCGacaccccccCGCCc-GCCGGGGGaggCUUCc -3'
miRNA:   3'- -CCGGGGC---------GCGGucUGGCCCCCa--GAAG- -5'
29413 5' -63.9 NC_006151.1 + 18756 0.69 0.388427
Target:  5'- gGGCCCCacggggugcccgggGC-CCGGGCCGGGGccGUCa-- -3'
miRNA:   3'- -CCGGGG--------------CGcGGUCUGGCCCC--CAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.