miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 3' -57.5 NC_006151.1 + 108508 1.08 0.002322
Target:  5'- aCACGGUCGGACCAGACCAGCAUCGGAc -3'
miRNA:   3'- -GUGCCAGCCUGGUCUGGUCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 59147 0.78 0.231035
Target:  5'- cCGCGGgCGGGuCCAGGCCGGCGUCGc- -3'
miRNA:   3'- -GUGCCaGCCU-GGUCUGGUCGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 104846 0.78 0.248204
Target:  5'- gGCGGaggCGGACCAGGCCgcGGCGaCGGAg -3'
miRNA:   3'- gUGCCa--GCCUGGUCUGG--UCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 8240 0.76 0.313083
Target:  5'- gGCGGggaGGGCCGGGCCGGCGcgcCGGGa -3'
miRNA:   3'- gUGCCag-CCUGGUCUGGUCGUa--GCCU- -5'
29414 3' -57.5 NC_006151.1 + 64375 0.76 0.334903
Target:  5'- gCACGGUCGaGGCCGuGGCCAGCccgCGGc -3'
miRNA:   3'- -GUGCCAGC-CUGGU-CUGGUCGua-GCCu -5'
29414 3' -57.5 NC_006151.1 + 7711 0.74 0.39003
Target:  5'- cCGCcGUCGGACCggGGACCGGCGacCGGAc -3'
miRNA:   3'- -GUGcCAGCCUGG--UCUGGUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 36503 0.74 0.39003
Target:  5'- -cCGGUCGGugagcCCGGGCCGGCGgcgcggccUCGGAc -3'
miRNA:   3'- guGCCAGCCu----GGUCUGGUCGU--------AGCCU- -5'
29414 3' -57.5 NC_006151.1 + 62096 0.73 0.459859
Target:  5'- gCGCGGUCGGcCUGGGCgCGGCcgugGUCGGGc -3'
miRNA:   3'- -GUGCCAGCCuGGUCUG-GUCG----UAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 10425 0.72 0.516333
Target:  5'- cCGCGGgUGGGCCgAGGCCGGCGg-GGAg -3'
miRNA:   3'- -GUGCCaGCCUGG-UCUGGUCGUagCCU- -5'
29414 3' -57.5 NC_006151.1 + 55434 0.72 0.526025
Target:  5'- gGCGGgcgCGGACgGGACCGGCGccgcCGGc -3'
miRNA:   3'- gUGCCa--GCCUGgUCUGGUCGUa---GCCu -5'
29414 3' -57.5 NC_006151.1 + 8484 0.71 0.565417
Target:  5'- -uCGGUCGGACgGGGCgGGCGg-GGAg -3'
miRNA:   3'- guGCCAGCCUGgUCUGgUCGUagCCU- -5'
29414 3' -57.5 NC_006151.1 + 18689 0.71 0.585409
Target:  5'- cCACGGgcgcgCGGGCgGcGCCGGCGUCGuGAc -3'
miRNA:   3'- -GUGCCa----GCCUGgUcUGGUCGUAGC-CU- -5'
29414 3' -57.5 NC_006151.1 + 49029 0.71 0.589425
Target:  5'- cCACGGgcCGGGCCAGGCCcacgggcuggccuucAGCGUcCGGc -3'
miRNA:   3'- -GUGCCa-GCCUGGUCUGG---------------UCGUA-GCCu -5'
29414 3' -57.5 NC_006151.1 + 88203 0.7 0.605532
Target:  5'- -gUGGUCGGACCAGGCgaGGCGcgccucCGGGg -3'
miRNA:   3'- guGCCAGCCUGGUCUGg-UCGUa-----GCCU- -5'
29414 3' -57.5 NC_006151.1 + 111345 0.7 0.615627
Target:  5'- gACGGUCGGG-CGGAUgGGCGcgCGGGg -3'
miRNA:   3'- gUGCCAGCCUgGUCUGgUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 57591 0.7 0.615627
Target:  5'- gGCGcaCGuGACCAGGCCGGCcUCGGc -3'
miRNA:   3'- gUGCcaGC-CUGGUCUGGUCGuAGCCu -5'
29414 3' -57.5 NC_006151.1 + 60499 0.7 0.625734
Target:  5'- cCACGaGcUCGGAgaAGGCCAGCGUCGa- -3'
miRNA:   3'- -GUGC-C-AGCCUggUCUGGUCGUAGCcu -5'
29414 3' -57.5 NC_006151.1 + 68048 0.7 0.635845
Target:  5'- gCGCGG-CGGGCaCGGGCuCGGCGaCGGGc -3'
miRNA:   3'- -GUGCCaGCCUG-GUCUG-GUCGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 4120 0.7 0.645953
Target:  5'- cCGCGGccugccgccgcUCGG-CCGGGCCGGCccCGGGg -3'
miRNA:   3'- -GUGCC-----------AGCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 142987 0.7 0.645953
Target:  5'- cCGCGGgUGGGCCcGACCgcAGCAUCGcGGc -3'
miRNA:   3'- -GUGCCaGCCUGGuCUGG--UCGUAGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.