miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 3' -57.5 NC_006151.1 + 2605 0.66 0.842657
Target:  5'- gCGCGG-CGGcaGCgGGACCGGgGUcCGGGg -3'
miRNA:   3'- -GUGCCaGCC--UGgUCUGGUCgUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 3115 0.69 0.715954
Target:  5'- cCGCGGcgCGGGucCCAGGCCGgGCG-CGGGg -3'
miRNA:   3'- -GUGCCa-GCCU--GGUCUGGU-CGUaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 3727 0.68 0.773335
Target:  5'- gGCGcUgGGuCCGGGCCGGCggCGGGg -3'
miRNA:   3'- gUGCcAgCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 3947 0.66 0.850561
Target:  5'- gCGCGGgcuccgCGGGcCCGGGCCGcGCggCGGc -3'
miRNA:   3'- -GUGCCa-----GCCU-GGUCUGGU-CGuaGCCu -5'
29414 3' -57.5 NC_006151.1 + 4120 0.7 0.645953
Target:  5'- cCGCGGccugccgccgcUCGG-CCGGGCCGGCccCGGGg -3'
miRNA:   3'- -GUGCC-----------AGCCuGGUCUGGUCGuaGCCU- -5'
29414 3' -57.5 NC_006151.1 + 4897 0.68 0.754606
Target:  5'- gAgGGUCGGAgCCGGGCCAGgGcuccccgagCGGGg -3'
miRNA:   3'- gUgCCAGCCU-GGUCUGGUCgUa--------GCCU- -5'
29414 3' -57.5 NC_006151.1 + 7711 0.74 0.39003
Target:  5'- cCGCcGUCGGACCggGGACCGGCGacCGGAc -3'
miRNA:   3'- -GUGcCAGCCUGG--UCUGGUCGUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 8240 0.76 0.313083
Target:  5'- gGCGGggaGGGCCGGGCCGGCGcgcCGGGa -3'
miRNA:   3'- gUGCCag-CCUGGUCUGGUCGUa--GCCU- -5'
29414 3' -57.5 NC_006151.1 + 8484 0.71 0.565417
Target:  5'- -uCGGUCGGACgGGGCgGGCGg-GGAg -3'
miRNA:   3'- guGCCAGCCUGgUCUGgUCGUagCCU- -5'
29414 3' -57.5 NC_006151.1 + 10425 0.72 0.516333
Target:  5'- cCGCGGgUGGGCCgAGGCCGGCGg-GGAg -3'
miRNA:   3'- -GUGCCaGCCUGG-UCUGGUCGUagCCU- -5'
29414 3' -57.5 NC_006151.1 + 11880 0.66 0.826297
Target:  5'- uCGCGGcgauUCGGGCCGcAUCGaggcGCGUCGGGg -3'
miRNA:   3'- -GUGCC----AGCCUGGUcUGGU----CGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 14644 0.7 0.645953
Target:  5'- gGCGGcCGGGCuCGGGuccgguuccgggUCGGCGUCGGGg -3'
miRNA:   3'- gUGCCaGCCUG-GUCU------------GGUCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 18183 0.66 0.858271
Target:  5'- uGCGGgCGGGCCGGuucucCCGGUAUuuaagCGGGg -3'
miRNA:   3'- gUGCCaGCCUGGUCu----GGUCGUA-----GCCU- -5'
29414 3' -57.5 NC_006151.1 + 18689 0.71 0.585409
Target:  5'- cCACGGgcgcgCGGGCgGcGCCGGCGUCGuGAc -3'
miRNA:   3'- -GUGCCa----GCCUGgUcUGGUCGUAGC-CU- -5'
29414 3' -57.5 NC_006151.1 + 22522 0.67 0.809248
Target:  5'- uCGCGGgggagUCGGGCgGGGCCGGguCAggCGGAg -3'
miRNA:   3'- -GUGCC-----AGCCUGgUCUGGUC--GUa-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 26347 0.69 0.676182
Target:  5'- uCACGGggCGGcGgCGGGCC-GCGUCGGGg -3'
miRNA:   3'- -GUGCCa-GCC-UgGUCUGGuCGUAGCCU- -5'
29414 3' -57.5 NC_006151.1 + 28512 0.69 0.715954
Target:  5'- gGCGGUCcGGCCcgcgGGACgGGCGUcCGGGa -3'
miRNA:   3'- gUGCCAGcCUGG----UCUGgUCGUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 28793 0.69 0.715954
Target:  5'- gGCGGUCcGGCCcgcgGGACgGGCGUcCGGGa -3'
miRNA:   3'- gUGCCAGcCUGG----UCUGgUCGUA-GCCU- -5'
29414 3' -57.5 NC_006151.1 + 36503 0.74 0.39003
Target:  5'- -cCGGUCGGugagcCCGGGCCGGCGgcgcggccUCGGAc -3'
miRNA:   3'- guGCCAGCCu----GGUCUGGUCGU--------AGCCU- -5'
29414 3' -57.5 NC_006151.1 + 49029 0.71 0.589425
Target:  5'- cCACGGgcCGGGCCAGGCCcacgggcuggccuucAGCGUcCGGc -3'
miRNA:   3'- -GUGCCa-GCCUGGUCUGG---------------UCGUA-GCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.