miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 5' -59 NC_006151.1 + 108542 1.12 0.00123
Target:  5'- uCCUCCGGGGACAUCGGACUCCGAGCCc -3'
miRNA:   3'- -GGAGGCCCCUGUAGCCUGAGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 123772 0.8 0.173229
Target:  5'- gCC-CCGGGGGCAUCGG-C-CCGGGCa -3'
miRNA:   3'- -GGaGGCCCCUGUAGCCuGaGGCUCGg -5'
29414 5' -59 NC_006151.1 + 5004 0.78 0.215057
Target:  5'- uCCUgCgCGGGGGCcgggCGGGCUCCgGGGCCg -3'
miRNA:   3'- -GGA-G-GCCCCUGua--GCCUGAGG-CUCGG- -5'
29414 5' -59 NC_006151.1 + 113101 0.77 0.258049
Target:  5'- gCCaCCGGGGGCGgggccgcggacgCGGACgccgCCGGGCCc -3'
miRNA:   3'- -GGaGGCCCCUGUa-----------GCCUGa---GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 13673 0.77 0.258049
Target:  5'- gCCUCCGGGGACGcgccggccaaugCGGGCUcCCGGGaCg -3'
miRNA:   3'- -GGAGGCCCCUGUa-----------GCCUGA-GGCUCgG- -5'
29414 5' -59 NC_006151.1 + 13392 0.77 0.265254
Target:  5'- gCCUCCGGGGACGcgccggccaaUgGGGgagCCGGGCCc -3'
miRNA:   3'- -GGAGGCCCCUGU----------AgCCUga-GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 20145 0.75 0.346373
Target:  5'- gCCg-CGGGGGCGgcgcgUGGACcgCCGGGCCg -3'
miRNA:   3'- -GGagGCCCCUGUa----GCCUGa-GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 57532 0.74 0.385055
Target:  5'- gCCUCCGGcGcGGCcgCGGGCacgucgCCGAGCa -3'
miRNA:   3'- -GGAGGCC-C-CUGuaGCCUGa-----GGCUCGg -5'
29414 5' -59 NC_006151.1 + 24472 0.74 0.393127
Target:  5'- aCCU-CGGGGGCGUUGGuCUCgauggucccggCGAGCCc -3'
miRNA:   3'- -GGAgGCCCCUGUAGCCuGAG-----------GCUCGG- -5'
29414 5' -59 NC_006151.1 + 28278 0.74 0.401308
Target:  5'- gCC-CCGGGGACG-CGGGC-CCGgcucccccauuGGCCg -3'
miRNA:   3'- -GGaGGCCCCUGUaGCCUGaGGC-----------UCGG- -5'
29414 5' -59 NC_006151.1 + 28838 0.74 0.401308
Target:  5'- gCC-CCGGGGACG-CGGGC-CCGgcucccccauuGGCCg -3'
miRNA:   3'- -GGaGGCCCCUGUaGCCUGaGGC-----------UCGG- -5'
29414 5' -59 NC_006151.1 + 8273 0.74 0.403783
Target:  5'- cCCUCCGGGGgaaagaguguccccGCG-CGGGCgccgcgucccgccCCGAGCCc -3'
miRNA:   3'- -GGAGGCCCC--------------UGUaGCCUGa------------GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 40072 0.73 0.409596
Target:  5'- cCCg-CGGGGGCcUCGGGCgCCgGGGCCg -3'
miRNA:   3'- -GGagGCCCCUGuAGCCUGaGG-CUCGG- -5'
29414 5' -59 NC_006151.1 + 665 0.73 0.438557
Target:  5'- --gCCGGGGcgggcuccgcggaucGCAUCGGcGCgCCGAGCCu -3'
miRNA:   3'- ggaGGCCCC---------------UGUAGCC-UGaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 3932 0.73 0.443788
Target:  5'- ---gCGGGGGCAggccgggcgCGGGCUCCGcgGGCCc -3'
miRNA:   3'- ggagGCCCCUGUa--------GCCUGAGGC--UCGG- -5'
29414 5' -59 NC_006151.1 + 11463 0.73 0.451701
Target:  5'- gCCcCCGGGGcCAUCGGcuggaacACcCUGAGCCu -3'
miRNA:   3'- -GGaGGCCCCuGUAGCC-------UGaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 22521 0.73 0.452585
Target:  5'- -aUCgCGGGGGaGUCGGGCggggCCGGGUCa -3'
miRNA:   3'- ggAG-GCCCCUgUAGCCUGa---GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 31745 0.72 0.477707
Target:  5'- cCCgcgCCGGGGACGcgccugcggcggCGGGCgcgcgCCGGGCg -3'
miRNA:   3'- -GGa--GGCCCCUGUa-----------GCCUGa----GGCUCGg -5'
29414 5' -59 NC_006151.1 + 2324 0.72 0.479528
Target:  5'- aCCagCGGGGcggccucgGCGUCGGGCUCC-AGCa -3'
miRNA:   3'- -GGagGCCCC--------UGUAGCCUGAGGcUCGg -5'
29414 5' -59 NC_006151.1 + 126129 0.72 0.488683
Target:  5'- cCCUUCGGGGcgcucgcCAUCGGGCUgCUGgugcuGGCCg -3'
miRNA:   3'- -GGAGGCCCCu------GUAGCCUGA-GGC-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.