miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29414 5' -59 NC_006151.1 + 665 0.73 0.438557
Target:  5'- --gCCGGGGcgggcuccgcggaucGCAUCGGcGCgCCGAGCCu -3'
miRNA:   3'- ggaGGCCCC---------------UGUAGCC-UGaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 1801 0.66 0.83617
Target:  5'- aCCgggCCGGGGagGCAggcgcCGGggaggcaaGCgccgCCGGGCCg -3'
miRNA:   3'- -GGa--GGCCCC--UGUa----GCC--------UGa---GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 1896 0.67 0.739951
Target:  5'- ---aCGGGGACGaggacgaGGACgaggaCCGGGCCg -3'
miRNA:   3'- ggagGCCCCUGUag-----CCUGa----GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 2324 0.72 0.479528
Target:  5'- aCCagCGGGGcggccucgGCGUCGGGCUCC-AGCa -3'
miRNA:   3'- -GGagGCCCC--------UGUAGCCUGAGGcUCGg -5'
29414 5' -59 NC_006151.1 + 3676 0.71 0.516618
Target:  5'- uCC-CCGGGG-CggCGGGCcCCGGGCg -3'
miRNA:   3'- -GGaGGCCCCuGuaGCCUGaGGCUCGg -5'
29414 5' -59 NC_006151.1 + 3932 0.73 0.443788
Target:  5'- ---gCGGGGGCAggccgggcgCGGGCUCCGcgGGCCc -3'
miRNA:   3'- ggagGCCCCUGUa--------GCCUGAGGC--UCGG- -5'
29414 5' -59 NC_006151.1 + 4764 0.69 0.643032
Target:  5'- aUCUCCGGgaugaagacGGGCA-CGGGC-CCG-GCCg -3'
miRNA:   3'- -GGAGGCC---------CCUGUaGCCUGaGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 4886 0.67 0.785643
Target:  5'- gCCgucggCCGGaGGG--UCGGAg-CCGGGCCa -3'
miRNA:   3'- -GGa----GGCC-CCUguAGCCUgaGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 5004 0.78 0.215057
Target:  5'- uCCUgCgCGGGGGCcgggCGGGCUCCgGGGCCg -3'
miRNA:   3'- -GGA-G-GCCCCUGua--GCCUGAGG-CUCGG- -5'
29414 5' -59 NC_006151.1 + 5261 0.67 0.776729
Target:  5'- gCC-CgGGGGGCGgagggcgagCGGGCcggggagaggUCCGAGUCg -3'
miRNA:   3'- -GGaGgCCCCUGUa--------GCCUG----------AGGCUCGG- -5'
29414 5' -59 NC_006151.1 + 5611 0.7 0.610496
Target:  5'- cCCUCCGGcGGAgggggcgccgccgcCGcCGGGCgCCGAGaCCg -3'
miRNA:   3'- -GGAGGCC-CCU--------------GUaGCCUGaGGCUC-GG- -5'
29414 5' -59 NC_006151.1 + 5784 0.69 0.643032
Target:  5'- cCCUCgCGGGGGacCAUCuccgcgGGGCUgCCGAgggGCCg -3'
miRNA:   3'- -GGAG-GCCCCU--GUAG------CCUGA-GGCU---CGG- -5'
29414 5' -59 NC_006151.1 + 5878 0.66 0.80308
Target:  5'- gCCgCCGGGGGCccCGGcCUCU--GCCg -3'
miRNA:   3'- -GGaGGCCCCUGuaGCCuGAGGcuCGG- -5'
29414 5' -59 NC_006151.1 + 6120 0.66 0.828139
Target:  5'- ---aCGGGGcgGCcUCGuGGCUCCG-GCCg -3'
miRNA:   3'- ggagGCCCC--UGuAGC-CUGAGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 6474 0.67 0.771322
Target:  5'- uUCUCUGGcGGGCcgagagccucgguggGUCGGGCgUCCGucgagggcugauAGCCg -3'
miRNA:   3'- -GGAGGCC-CCUG---------------UAGCCUG-AGGC------------UCGG- -5'
29414 5' -59 NC_006151.1 + 7721 0.67 0.776729
Target:  5'- --aCCGGGGACcggcgacCGGAC-CCGAaCCg -3'
miRNA:   3'- ggaGGCCCCUGua-----GCCUGaGGCUcGG- -5'
29414 5' -59 NC_006151.1 + 8273 0.74 0.403783
Target:  5'- cCCUCCGGGGgaaagaguguccccGCG-CGGGCgccgcgucccgccCCGAGCCc -3'
miRNA:   3'- -GGAGGCCCC--------------UGUaGCCUGa------------GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 9059 0.71 0.554808
Target:  5'- gCUCCGGGGGCGcCGG---CCG-GCCa -3'
miRNA:   3'- gGAGGCCCCUGUaGCCugaGGCuCGG- -5'
29414 5' -59 NC_006151.1 + 10996 0.67 0.780309
Target:  5'- gCgggCCGGGGGCccCGGcucgcccgcccgcucGCUcgCCGGGCCg -3'
miRNA:   3'- gGa--GGCCCCUGuaGCC---------------UGA--GGCUCGG- -5'
29414 5' -59 NC_006151.1 + 11042 0.7 0.613451
Target:  5'- gCCggCCGGGGGCccggccUGGACg-CGGGCCa -3'
miRNA:   3'- -GGa-GGCCCCUGua----GCCUGagGCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.