miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 3' -69 NC_006151.1 + 108321 1.09 0.000242
Target:  5'- cCCCCCGCGCCCGGGCCCGCCCCAUCGg -3'
miRNA:   3'- -GGGGGCGCGGGCCCGGGCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 58505 0.79 0.043603
Target:  5'- -gCCCGCGCgCGGGCCgGCCUCGUCc -3'
miRNA:   3'- ggGGGCGCGgGCCCGGgCGGGGUAGc -5'
29415 3' -69 NC_006151.1 + 38327 0.79 0.048139
Target:  5'- -gCCCGCGCCC-GGCCUGCCCCcgCu -3'
miRNA:   3'- ggGGGCGCGGGcCCGGGCGGGGuaGc -5'
29415 3' -69 NC_006151.1 + 9390 0.78 0.051839
Target:  5'- cCCCCCGCGCgggUCGGGCCUucuuCCCCAUCc -3'
miRNA:   3'- -GGGGGCGCG---GGCCCGGGc---GGGGUAGc -5'
29415 3' -69 NC_006151.1 + 37478 0.78 0.053133
Target:  5'- gCgCCGCGgCCGGGCCCGUgCCCGUCu -3'
miRNA:   3'- gGgGGCGCgGGCCCGGGCG-GGGUAGc -5'
29415 3' -69 NC_006151.1 + 130543 0.78 0.055816
Target:  5'- gCCCCCGCGCgaGGGCggcgcgcugCCGCCCCA-CGa -3'
miRNA:   3'- -GGGGGCGCGggCCCG---------GGCGGGGUaGC- -5'
29415 3' -69 NC_006151.1 + 62718 0.78 0.057206
Target:  5'- gCCCCGcCGCCCucgucccgcguuGaGGCCCGuCCCCAUCGu -3'
miRNA:   3'- gGGGGC-GCGGG------------C-CCGGGC-GGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 741 0.78 0.05863
Target:  5'- gCUUCCGCuCCgCGGcGCCCGCCCCAUUGg -3'
miRNA:   3'- -GGGGGCGcGG-GCC-CGGGCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 86184 0.77 0.066278
Target:  5'- gCCgCCGCGCUgcccccggCGGGCCCGCugCCCAUCa -3'
miRNA:   3'- -GGgGGCGCGG--------GCCCGGGCG--GGGUAGc -5'
29415 3' -69 NC_006151.1 + 38043 0.77 0.067919
Target:  5'- cCCgCCCGCGCCCcggccgcccucGGGCCCGCCugCC-UCGa -3'
miRNA:   3'- -GG-GGGCGCGGG-----------CCCGGGCGG--GGuAGC- -5'
29415 3' -69 NC_006151.1 + 2161 0.76 0.07308
Target:  5'- gUCCCCGUccucGCCgGGGCCgGCCCCggCGc -3'
miRNA:   3'- -GGGGGCG----CGGgCCCGGgCGGGGuaGC- -5'
29415 3' -69 NC_006151.1 + 39134 0.76 0.078617
Target:  5'- gCCCCGCGCCCggccuGGGaCCCGCgCCG-CGg -3'
miRNA:   3'- gGGGGCGCGGG-----CCC-GGGCGgGGUaGC- -5'
29415 3' -69 NC_006151.1 + 38575 0.76 0.078617
Target:  5'- gCCgCGCGCCCgGGGCCCGCCgCCc-CGg -3'
miRNA:   3'- gGGgGCGCGGG-CCCGGGCGG-GGuaGC- -5'
29415 3' -69 NC_006151.1 + 31337 0.76 0.082529
Target:  5'- aCCCUCgGCGCCgUGGGCCCGaCCCCgGUCc -3'
miRNA:   3'- -GGGGG-CGCGG-GCCCGGGC-GGGG-UAGc -5'
29415 3' -69 NC_006151.1 + 59322 0.76 0.082529
Target:  5'- -gCCCGCGCCCccGCCCGCCCCcagCGc -3'
miRNA:   3'- ggGGGCGCGGGccCGGGCGGGGua-GC- -5'
29415 3' -69 NC_006151.1 + 79086 0.75 0.085792
Target:  5'- gCCCCCgcgcgcgcgagcgaGCGCCCcuccgucguggcuGGGCcacggCCGCCCCAUCGu -3'
miRNA:   3'- -GGGGG--------------CGCGGG-------------CCCG-----GGCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 54611 0.75 0.086627
Target:  5'- gUCCCgGUGCgCCGGGCgCGCCCCGggGg -3'
miRNA:   3'- -GGGGgCGCG-GGCCCGgGCGGGGUagC- -5'
29415 3' -69 NC_006151.1 + 139913 0.75 0.086627
Target:  5'- gCUUCCGCGCCgCGGGCUCGUCgCCGUgGg -3'
miRNA:   3'- -GGGGGCGCGG-GCCCGGGCGG-GGUAgC- -5'
29415 3' -69 NC_006151.1 + 38815 0.75 0.086627
Target:  5'- aCCCCGCGCCCGacGGCggcuuCCGCCgCGUCc -3'
miRNA:   3'- gGGGGCGCGGGC--CCG-----GGCGGgGUAGc -5'
29415 3' -69 NC_006151.1 + 40081 0.75 0.088747
Target:  5'- gCCUCggGCGCCgGGGCCgGCCCCggCGa -3'
miRNA:   3'- gGGGG--CGCGGgCCCGGgCGGGGuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.