miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 3' -69 NC_006151.1 + 741 0.78 0.05863
Target:  5'- gCUUCCGCuCCgCGGcGCCCGCCCCAUUGg -3'
miRNA:   3'- -GGGGGCGcGG-GCC-CGGGCGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 773 0.69 0.241329
Target:  5'- cCCCUCGCGCCaCGcGGUcgCCGUCgUCAUCGu -3'
miRNA:   3'- -GGGGGCGCGG-GC-CCG--GGCGG-GGUAGC- -5'
29415 3' -69 NC_006151.1 + 2161 0.76 0.07308
Target:  5'- gUCCCCGUccucGCCgGGGCCgGCCCCggCGc -3'
miRNA:   3'- -GGGGGCG----CGGgCCCGGgCGGGGuaGC- -5'
29415 3' -69 NC_006151.1 + 2198 0.66 0.352492
Target:  5'- gCCCCCGCggGCCggUGGGUCuccacggCGCCCCcggCGg -3'
miRNA:   3'- -GGGGGCG--CGG--GCCCGG-------GCGGGGua-GC- -5'
29415 3' -69 NC_006151.1 + 3579 0.66 0.367686
Target:  5'- gCgCuuGCGCCgGGGCCCccgGUCCUcuucGUCGu -3'
miRNA:   3'- -GgGggCGCGGgCCCGGG---CGGGG----UAGC- -5'
29415 3' -69 NC_006151.1 + 3953 0.68 0.293127
Target:  5'- gCUCCGCggGCCCGGGCCgcgcggcgGCCUCggCGa -3'
miRNA:   3'- gGGGGCG--CGGGCCCGGg-------CGGGGuaGC- -5'
29415 3' -69 NC_006151.1 + 4129 0.72 0.153305
Target:  5'- gCCgCCGCucGgCCGGGCCgGCCCCGgggaUCGc -3'
miRNA:   3'- -GGgGGCG--CgGGCCCGGgCGGGGU----AGC- -5'
29415 3' -69 NC_006151.1 + 4847 0.67 0.331569
Target:  5'- cCCCUCGCGggaguCCCcGGCgCCGCCguagcggacgcggCCGUCGg -3'
miRNA:   3'- -GGGGGCGC-----GGGcCCG-GGCGG-------------GGUAGC- -5'
29415 3' -69 NC_006151.1 + 6011 0.68 0.280309
Target:  5'- aCCCgGCGgccggggaCCCGGGCUCGUCCUccuccucgucuucGUCGu -3'
miRNA:   3'- gGGGgCGC--------GGGCCCGGGCGGGG-------------UAGC- -5'
29415 3' -69 NC_006151.1 + 6231 0.69 0.23607
Target:  5'- gCCgCgGCGCCgGGaGCCCuggcuGCCgCCGUCGg -3'
miRNA:   3'- -GGgGgCGCGGgCC-CGGG-----CGG-GGUAGC- -5'
29415 3' -69 NC_006151.1 + 6855 0.73 0.124089
Target:  5'- gCCCCCGCGgC--GGCCaucuuGCCCCAUCGa -3'
miRNA:   3'- -GGGGGCGCgGgcCCGGg----CGGGGUAGC- -5'
29415 3' -69 NC_006151.1 + 7074 0.66 0.390924
Target:  5'- uCCCgCGCGCCUcugauuugcaugcccGGCCCGCUcugcggCCAUCu -3'
miRNA:   3'- -GGGgGCGCGGGc--------------CCGGGCGG------GGUAGc -5'
29415 3' -69 NC_006151.1 + 7621 0.66 0.353206
Target:  5'- cCUCCCGCGaccCCCGcGG-UCGCCCCAc-- -3'
miRNA:   3'- -GGGGGCGC---GGGC-CCgGGCGGGGUagc -5'
29415 3' -69 NC_006151.1 + 7653 0.71 0.168197
Target:  5'- gCCUCGCGCUCGGcGCgCGCUCCGagGg -3'
miRNA:   3'- gGGGGCGCGGGCC-CGgGCGGGGUagC- -5'
29415 3' -69 NC_006151.1 + 7784 0.68 0.280909
Target:  5'- aCCUCGaGCCCGGaCCCGCCCgGa-- -3'
miRNA:   3'- gGGGGCgCGGGCCcGGGCGGGgUagc -5'
29415 3' -69 NC_006151.1 + 8291 0.7 0.192964
Target:  5'- gUCCCCGCGCgggcgCCGcGuCCCGCCCCGa-- -3'
miRNA:   3'- -GGGGGCGCG-----GGCcC-GGGCGGGGUagc -5'
29415 3' -69 NC_006151.1 + 8322 0.7 0.21599
Target:  5'- gCCCCCgggGCGCgCGGGCCucgauCGCgCCCGcCGg -3'
miRNA:   3'- -GGGGG---CGCGgGCCCGG-----GCG-GGGUaGC- -5'
29415 3' -69 NC_006151.1 + 8935 0.66 0.346118
Target:  5'- gCCCCCGCccccuguCCCGGuCCCGgUCCCAcgCGc -3'
miRNA:   3'- -GGGGGCGc------GGGCCcGGGC-GGGGUa-GC- -5'
29415 3' -69 NC_006151.1 + 9050 0.67 0.318796
Target:  5'- gCCCCGCGUgcuCCGGgggcGCCgGCCggCCAUCc -3'
miRNA:   3'- gGGGGCGCG---GGCC----CGGgCGG--GGUAGc -5'
29415 3' -69 NC_006151.1 + 9101 0.67 0.29939
Target:  5'- cUCCCCGCcCCCGa-CCCGCCUCGcacUCGc -3'
miRNA:   3'- -GGGGGCGcGGGCccGGGCGGGGU---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.