miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 40554 0.66 0.955611
Target:  5'- -gCGGUGGUGgaagcggcggcggcgGCCGCggCGgAGGGCUc -3'
miRNA:   3'- agGCUACCAC---------------UGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 41482 0.68 0.889215
Target:  5'- -aCGAcGGcGACCGCGUgGcgcgaggGGAGCCa -3'
miRNA:   3'- agGCUaCCaCUGGCGUAgCa------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 43386 0.73 0.664333
Target:  5'- -gCGGUGGUGGCCGUcgcUCGU--GGCCg -3'
miRNA:   3'- agGCUACCACUGGCGu--AGCAucUCGG- -5'
29415 5' -54.2 NC_006151.1 + 65955 0.73 0.623124
Target:  5'- gUCGAgcgcGGCCGCGUCGUcGAGCCg -3'
miRNA:   3'- aGGCUaccaCUGGCGUAGCAuCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 69700 0.76 0.482664
Target:  5'- gUCGAUGGUGGCCGCcgCcgGGGGCa -3'
miRNA:   3'- aGGCUACCACUGGCGuaGcaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 72910 0.69 0.852275
Target:  5'- cCCGGcucuUGGcGACCGCcUCGgcGGGCg -3'
miRNA:   3'- aGGCU----ACCaCUGGCGuAGCauCUCGg -5'
29415 5' -54.2 NC_006151.1 + 75780 0.66 0.952842
Target:  5'- gUCCGcGUGcGUGuCCGCcagCGUcagcacguggugcaGGAGCCg -3'
miRNA:   3'- -AGGC-UAC-CACuGGCGua-GCA--------------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 77002 0.7 0.819051
Target:  5'- gCCGcgagGGUGGcCCGCGagcCGUGGAGCg -3'
miRNA:   3'- aGGCua--CCACU-GGCGUa--GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 77714 0.66 0.949958
Target:  5'- aCCGccagcagGACCGCGUCcUGGAGCUc -3'
miRNA:   3'- aGGCuacca--CUGGCGUAGcAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 81567 0.67 0.912894
Target:  5'- gCCG-UGGUGcggagcagggucucGCgCGCGUCGccGGGGCCg -3'
miRNA:   3'- aGGCuACCAC--------------UG-GCGUAGCa-UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 82510 0.66 0.945638
Target:  5'- gCCGAgcaGGUGcCCGCGgaugcgcgugUCGUuGAGCg -3'
miRNA:   3'- aGGCUa--CCACuGGCGU----------AGCAuCUCGg -5'
29415 5' -54.2 NC_006151.1 + 84806 0.72 0.71518
Target:  5'- cCCGA-GGcGACCGCGgccgCGgacGGGGCCg -3'
miRNA:   3'- aGGCUaCCaCUGGCGUa---GCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 85142 0.7 0.792296
Target:  5'- aCC--UGGUGcACCGCGUgCGgcagGGGGCCg -3'
miRNA:   3'- aGGcuACCAC-UGGCGUA-GCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 88818 0.66 0.957896
Target:  5'- gUCCGGUGGgcgagGGagGCGUUGgcGGAGCUg -3'
miRNA:   3'- -AGGCUACCa----CUggCGUAGCa-UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 89280 0.75 0.521582
Target:  5'- gCCGcgGcGaUGGCCGCcgCGUAGAGCg -3'
miRNA:   3'- aGGCuaC-C-ACUGGCGuaGCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 89554 0.66 0.961522
Target:  5'- gCCGGUGGaGGCCGCGagGcugauGGGCa -3'
miRNA:   3'- aGGCUACCaCUGGCGUagCau---CUCGg -5'
29415 5' -54.2 NC_006151.1 + 92552 0.69 0.867701
Target:  5'- cUCGGUgcagcaGGUGGCCGaGUCGcuggAGGGCCg -3'
miRNA:   3'- aGGCUA------CCACUGGCgUAGCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 96316 0.71 0.783073
Target:  5'- gCCGAcUGcaGGCCGCGcgCGUAGAGCg -3'
miRNA:   3'- aGGCU-ACcaCUGGCGUa-GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 97239 0.68 0.895933
Target:  5'- uUCCGGgUGGcgcGGCCGCGcaugUCG-GGGGCCc -3'
miRNA:   3'- -AGGCU-ACCa--CUGGCGU----AGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 97993 0.66 0.949958
Target:  5'- gCCGGgcgGcGUGGCCGCGUaGgcGGcGCCg -3'
miRNA:   3'- aGGCUa--C-CACUGGCGUAgCauCU-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.