miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 665 0.66 0.941081
Target:  5'- gCCGGggcGGgcuccgcgGAUCGCAUCGgcgcgccGAGCCu -3'
miRNA:   3'- aGGCUa--CCa-------CUGGCGUAGCau-----CUCGG- -5'
29415 5' -54.2 NC_006151.1 + 2893 0.69 0.875095
Target:  5'- cUCGAUGGUGuCCaGCA-CGauGAGCCg -3'
miRNA:   3'- aGGCUACCACuGG-CGUaGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 3633 0.67 0.914672
Target:  5'- cCCGcgGaG-GGCCGCGcCGgAGAGCCc -3'
miRNA:   3'- aGGCuaC-CaCUGGCGUaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 3954 0.75 0.541497
Target:  5'- cUCCGcgGGcccgGGCCGCGcggcggccUCGgcGAGCCg -3'
miRNA:   3'- -AGGCuaCCa---CUGGCGU--------AGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 4145 0.69 0.844255
Target:  5'- gCCGGccccgGG-GAUCGCGUCGcGGAGCg -3'
miRNA:   3'- aGGCUa----CCaCUGGCGUAGCaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 4922 0.69 0.860093
Target:  5'- cCCGAgcggGGUGAgcagcggcCCGUcgGUCGgcgGGGGCCc -3'
miRNA:   3'- aGGCUa---CCACU--------GGCG--UAGCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 5959 0.71 0.773713
Target:  5'- cCCGAggacgaGGUGACCGUGcUCGgagccugauggAGAGCCc -3'
miRNA:   3'- aGGCUa-----CCACUGGCGU-AGCa----------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 13169 0.68 0.908664
Target:  5'- uUCCGGgacGGUcGCCGCGgcCGUcucGGGGCCc -3'
miRNA:   3'- -AGGCUa--CCAcUGGCGUa-GCA---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 14659 0.68 0.889215
Target:  5'- gUCCGGUuccGG-GuCgGCGUCGgGGAGCCu -3'
miRNA:   3'- -AGGCUA---CCaCuGgCGUAGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 17350 0.69 0.85932
Target:  5'- cUCGGUGGUGAuguagaaCgGCGcCGUGGGGUCg -3'
miRNA:   3'- aGGCUACCACU-------GgCGUaGCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 19429 0.68 0.908664
Target:  5'- cUCCGG-GGUGACgauggGCGgcucgCGcUGGAGCCg -3'
miRNA:   3'- -AGGCUaCCACUGg----CGUa----GC-AUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 20145 0.67 0.925963
Target:  5'- gCCGcgGG-GGCgGCG-CGUGGAccGCCg -3'
miRNA:   3'- aGGCuaCCaCUGgCGUaGCAUCU--CGG- -5'
29415 5' -54.2 NC_006151.1 + 21593 0.66 0.961522
Target:  5'- gUCGAUGGcguacggcgUGGCgGCggCGUAG-GCCc -3'
miRNA:   3'- aGGCUACC---------ACUGgCGuaGCAUCuCGG- -5'
29415 5' -54.2 NC_006151.1 + 22101 0.72 0.71518
Target:  5'- gCCGGUGGgccACCGCcUCGUucAGcAGCCg -3'
miRNA:   3'- aGGCUACCac-UGGCGuAGCA--UC-UCGG- -5'
29415 5' -54.2 NC_006151.1 + 22970 0.74 0.6015
Target:  5'- -aCGGUGGUGACCGUggucaugGUCGUGaucucGGCCg -3'
miRNA:   3'- agGCUACCACUGGCG-------UAGCAUc----UCGG- -5'
29415 5' -54.2 NC_006151.1 + 25391 0.67 0.936284
Target:  5'- -gCGGUGGUucucGACCGCGaCGgGGGcGCCg -3'
miRNA:   3'- agGCUACCA----CUGGCGUaGCaUCU-CGG- -5'
29415 5' -54.2 NC_006151.1 + 29105 0.69 0.852275
Target:  5'- cCCGGaaauuuccGG-GACCGCAUCGc-GGGCCg -3'
miRNA:   3'- aGGCUa-------CCaCUGGCGUAGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 35238 0.69 0.836039
Target:  5'- gCCGAga-UGGCCGCcgCG-GGGGCCg -3'
miRNA:   3'- aGGCUaccACUGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 35396 0.73 0.622093
Target:  5'- gUCGAUGGggcaagaUGGCCGCcgCG-GGGGCCg -3'
miRNA:   3'- aGGCUACC-------ACUGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 38907 0.72 0.71518
Target:  5'- cCCGA-GGUGGcCCGCGccUCGUGGA-CCa -3'
miRNA:   3'- aGGCUaCCACU-GGCGU--AGCAUCUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.