miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29415 5' -54.2 NC_006151.1 + 108356 1.14 0.002223
Target:  5'- aUCCGAUGGUGACCGCAUCGUAGAGCCg -3'
miRNA:   3'- -AGGCUACCACUGGCGUAGCAUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 106228 0.86 0.142213
Target:  5'- cCUGAUGGUGGCCGCGguggcCGgcGAGCCg -3'
miRNA:   3'- aGGCUACCACUGGCGUa----GCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 69700 0.76 0.482664
Target:  5'- gUCGAUGGUGGCCGCcgCcgGGGGCa -3'
miRNA:   3'- aGGCUACCACUGGCGuaGcaUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 89280 0.75 0.521582
Target:  5'- gCCGcgGcGaUGGCCGCcgCGUAGAGCg -3'
miRNA:   3'- aGGCuaC-C-ACUGGCGuaGCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 3954 0.75 0.541497
Target:  5'- cUCCGcgGGcccgGGCCGCGcggcggccUCGgcGAGCCg -3'
miRNA:   3'- -AGGCuaCCa---CUGGCGU--------AGCauCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 22970 0.74 0.6015
Target:  5'- -aCGGUGGUGACCGUggucaugGUCGUGaucucGGCCg -3'
miRNA:   3'- agGCUACCACUGGCG-------UAGCAUc----UCGG- -5'
29415 5' -54.2 NC_006151.1 + 35396 0.73 0.622093
Target:  5'- gUCGAUGGggcaagaUGGCCGCcgCG-GGGGCCg -3'
miRNA:   3'- aGGCUACC-------ACUGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 65955 0.73 0.623124
Target:  5'- gUCGAgcgcGGCCGCGUCGUcGAGCCg -3'
miRNA:   3'- aGGCUaccaCUGGCGUAGCAuCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 43386 0.73 0.664333
Target:  5'- -gCGGUGGUGGCCGUcgcUCGU--GGCCg -3'
miRNA:   3'- agGCUACCACUGGCGu--AGCAucUCGG- -5'
29415 5' -54.2 NC_006151.1 + 38907 0.72 0.71518
Target:  5'- cCCGA-GGUGGcCCGCGccUCGUGGA-CCa -3'
miRNA:   3'- aGGCUaCCACU-GGCGU--AGCAUCUcGG- -5'
29415 5' -54.2 NC_006151.1 + 22101 0.72 0.71518
Target:  5'- gCCGGUGGgccACCGCcUCGUucAGcAGCCg -3'
miRNA:   3'- aGGCUACCac-UGGCGuAGCA--UC-UCGG- -5'
29415 5' -54.2 NC_006151.1 + 84806 0.72 0.71518
Target:  5'- cCCGA-GGcGACCGCGgccgCGgacGGGGCCg -3'
miRNA:   3'- aGGCUaCCaCUGGCGUa---GCa--UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 5959 0.71 0.773713
Target:  5'- cCCGAggacgaGGUGACCGUGcUCGgagccugauggAGAGCCc -3'
miRNA:   3'- aGGCUa-----CCACUGGCGU-AGCa----------UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 106162 0.71 0.783073
Target:  5'- cUUCGG-GGcgcugGACCGCGUCGcgcacccgccgcUGGAGCCg -3'
miRNA:   3'- -AGGCUaCCa----CUGGCGUAGC------------AUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 96316 0.71 0.783073
Target:  5'- gCCGAcUGcaGGCCGCGcgCGUAGAGCg -3'
miRNA:   3'- aGGCU-ACcaCUGGCGUa-GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 85142 0.7 0.792296
Target:  5'- aCC--UGGUGcACCGCGUgCGgcagGGGGCCg -3'
miRNA:   3'- aGGcuACCAC-UGGCGUA-GCa---UCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 77002 0.7 0.819051
Target:  5'- gCCGcgagGGUGGcCCGCGagcCGUGGAGCg -3'
miRNA:   3'- aGGCua--CCACU-GGCGUa--GCAUCUCGg -5'
29415 5' -54.2 NC_006151.1 + 105523 0.7 0.827636
Target:  5'- aCCGcAUGGcGGCgCGCAUCGggcccGAGCUg -3'
miRNA:   3'- aGGC-UACCaCUG-GCGUAGCau---CUCGG- -5'
29415 5' -54.2 NC_006151.1 + 35238 0.69 0.836039
Target:  5'- gCCGAga-UGGCCGCcgCG-GGGGCCg -3'
miRNA:   3'- aGGCUaccACUGGCGuaGCaUCUCGG- -5'
29415 5' -54.2 NC_006151.1 + 4145 0.69 0.844255
Target:  5'- gCCGGccccgGG-GAUCGCGUCGcGGAGCg -3'
miRNA:   3'- aGGCUa----CCaCUGGCGUAGCaUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.