Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29416 | 3' | -58.4 | NC_006151.1 | + | 71562 | 0.66 | 0.796279 |
Target: 5'- ---gGGGGGCGA-GGGGGACgGGCg- -3' miRNA: 3'- aggaCCUCUGCUgCCUCCUGgUCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 103420 | 0.66 | 0.805096 |
Target: 5'- -gCUGGGccCGGCGGuGGACCuGCUc -3' miRNA: 3'- agGACCUcuGCUGCCuCCUGGuCGAc -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 130941 | 0.66 | 0.805096 |
Target: 5'- ---cGGGGGCGGCGGGGGgucgcGCgGGCg- -3' miRNA: 3'- aggaCCUCUGCUGCCUCC-----UGgUCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 106478 | 0.66 | 0.813761 |
Target: 5'- cCCUGGGcGCacACGGAgacGGGCCAGCg- -3' miRNA: 3'- aGGACCUcUGc-UGCCU---CCUGGUCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 104564 | 0.66 | 0.813761 |
Target: 5'- cCCUGGGcgcGCGGCGcGcGGACguGCUGc -3' miRNA: 3'- aGGACCUc--UGCUGC-CuCCUGguCGAC- -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 75019 | 0.66 | 0.813761 |
Target: 5'- aCCUGGGGcACGGCGaAGGGCCcGggGa -3' miRNA: 3'- aGGACCUC-UGCUGCcUCCUGGuCgaC- -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 57031 | 0.66 | 0.813761 |
Target: 5'- aUCCaGGgcaGGAUcaGCGGGGGGCgCAGCUGc -3' miRNA: 3'- -AGGaCC---UCUGc-UGCCUCCUG-GUCGAC- -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 5039 | 0.66 | 0.822265 |
Target: 5'- gCCggGGAGgccGCGGCGGAGGAggaGGCg- -3' miRNA: 3'- aGGa-CCUC---UGCUGCCUCCUgg-UCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 5843 | 0.66 | 0.822265 |
Target: 5'- gCCggGGAGGCuGCGGAgggGGACgAGCg- -3' miRNA: 3'- aGGa-CCUCUGcUGCCU---CCUGgUCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 105258 | 0.66 | 0.822265 |
Target: 5'- gCCUGG-GACGAggccugGGAGGACUuugGGCg- -3' miRNA: 3'- aGGACCuCUGCUg-----CCUCCUGG---UCGac -5' |
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29416 | 3' | -58.4 | NC_006151.1 | + | 133498 | 0.66 | 0.822265 |
Target: 5'- cCUUGGcGGCG-CGGGGGGCgCGGgaGg -3' miRNA: 3'- aGGACCuCUGCuGCCUCCUG-GUCgaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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