miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 106784 0.69 0.641502
Target:  5'- gCCUGGAccuggccgcGGCGGCGGugcucgucGGGGCCccGCUGg -3'
miRNA:   3'- aGGACCU---------CUGCUGCC--------UCCUGGu-CGAC- -5'
29416 3' -58.4 NC_006151.1 + 64848 0.69 0.641502
Target:  5'- cCCgGcGAGGgccuCGGCGGAGGGCC-GCUGc -3'
miRNA:   3'- aGGaC-CUCU----GCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 41640 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41703 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 82461 0.69 0.651584
Target:  5'- aCCacgcGGAGACgGGCGGGGGcACCAcCUGg -3'
miRNA:   3'- aGGa---CCUCUG-CUGCCUCC-UGGUcGAC- -5'
29416 3' -58.4 NC_006151.1 + 133980 0.68 0.671696
Target:  5'- cCCucggUGGAGACGauggaagagagcGCGGGGGccACCAGCg- -3'
miRNA:   3'- aGG----ACCUCUGC------------UGCCUCC--UGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 134608 0.68 0.671696
Target:  5'- cCCUGGAGuCGggccaGCGcGuGGcCCAGCUGg -3'
miRNA:   3'- aGGACCUCuGC-----UGC-CuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 135003 0.68 0.671696
Target:  5'- gUCUUGGcggGGGCG-CGGGGGGgCAGCa- -3'
miRNA:   3'- -AGGACC---UCUGCuGCCUCCUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 3735 0.68 0.681709
Target:  5'- gUCCgGGccGGCGGCGGGGGAgCUGGCg- -3'
miRNA:   3'- -AGGaCCu-CUGCUGCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 38597 0.68 0.681709
Target:  5'- cCCcGGGGACGGCgaGGAGGAcgaggggcucuCCGGCg- -3'
miRNA:   3'- aGGaCCUCUGCUG--CCUCCU-----------GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 92011 0.68 0.681709
Target:  5'- aCCaGGAGACGACcGAGGACaacGCg- -3'
miRNA:   3'- aGGaCCUCUGCUGcCUCCUGgu-CGac -5'
29416 3' -58.4 NC_006151.1 + 61772 0.68 0.711475
Target:  5'- gCCgUGGuGcuGCGGCGcGAGGccgGCCGGCUGg -3'
miRNA:   3'- aGG-ACCuC--UGCUGC-CUCC---UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 110033 0.67 0.721277
Target:  5'- gCCUGGAgGACGAggaGGGGGACgAGg-- -3'
miRNA:   3'- aGGACCU-CUGCUg--CCUCCUGgUCgac -5'
29416 3' -58.4 NC_006151.1 + 131503 0.67 0.740651
Target:  5'- aCCaGGAGccccGCG-CGGGGGAaCGGCUGg -3'
miRNA:   3'- aGGaCCUC----UGCuGCCUCCUgGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 5986 0.67 0.768998
Target:  5'- gCCugaUGGAGAgccCGAcCGGGGGAcCCGGCg- -3'
miRNA:   3'- aGG---ACCUCU---GCU-GCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 90750 0.66 0.778222
Target:  5'- cCCUcGGGGGCGGCGGgcacgguggcGGGGUCGGCg- -3'
miRNA:   3'- aGGA-CCUCUGCUGCC----------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 49160 0.66 0.787318
Target:  5'- gCCUGGAGGCcugGGCGcgccgcGGGGugCuGCUGc -3'
miRNA:   3'- aGGACCUCUG---CUGC------CUCCugGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 108703 0.66 0.79092
Target:  5'- cUCCUGGAGcccccgggaguggugGCcagcgccgaggaGACGGuGGcCCGGCUGc -3'
miRNA:   3'- -AGGACCUC---------------UG------------CUGCCuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 86128 0.66 0.79539
Target:  5'- aCCUGGcccuguacgauagGGACGGCGG-GGAgCucgcGCUGa -3'
miRNA:   3'- aGGACC-------------UCUGCUGCCuCCUgGu---CGAC- -5'
29416 3' -58.4 NC_006151.1 + 82681 0.66 0.796279
Target:  5'- gCCgcgGGcgaGGGCGGCGGcccccgcgAGGGCCAGgaGg -3'
miRNA:   3'- aGGa--CC---UCUGCUGCC--------UCCUGGUCgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.