miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 71562 0.66 0.796279
Target:  5'- ---gGGGGGCGA-GGGGGACgGGCg- -3'
miRNA:   3'- aggaCCUCUGCUgCCUCCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 71635 0.69 0.621323
Target:  5'- gCCgggGGGGACGGuCGGGGGGCCGuCg- -3'
miRNA:   3'- aGGa--CCUCUGCU-GCCUCCUGGUcGac -5'
29416 3' -58.4 NC_006151.1 + 71770 0.76 0.2893
Target:  5'- gUCCUGcGGcagcGGCGGCGGGGGcugccgcACCAGCUGg -3'
miRNA:   3'- -AGGAC-CU----CUGCUGCCUCC-------UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 73571 0.71 0.501828
Target:  5'- gUCCUGGcgcaccaccgucaGGGCGAagcCGG-GGugCAGCUGg -3'
miRNA:   3'- -AGGACC-------------UCUGCU---GCCuCCugGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 75019 0.66 0.813761
Target:  5'- aCCUGGGGcACGGCGaAGGGCCcGggGa -3'
miRNA:   3'- aGGACCUC-UGCUGCcUCCUGGuCgaC- -5'
29416 3' -58.4 NC_006151.1 + 82461 0.69 0.651584
Target:  5'- aCCacgcGGAGACgGGCGGGGGcACCAcCUGg -3'
miRNA:   3'- aGGa---CCUCUG-CUGCCUCC-UGGUcGAC- -5'
29416 3' -58.4 NC_006151.1 + 82681 0.66 0.796279
Target:  5'- gCCgcgGGcgaGGGCGGCGGcccccgcgAGGGCCAGgaGg -3'
miRNA:   3'- aGGa--CC---UCUGCUGCC--------UCCUGGUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 85142 0.69 0.621323
Target:  5'- aCCUGGuGcaccgcguGCGGCaGGGGGCCGGCg- -3'
miRNA:   3'- aGGACCuC--------UGCUGcCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 86128 0.66 0.79539
Target:  5'- aCCUGGcccuguacgauagGGACGGCGG-GGAgCucgcGCUGa -3'
miRNA:   3'- aGGACC-------------UCUGCUGCCuCCUgGu---CGAC- -5'
29416 3' -58.4 NC_006151.1 + 90750 0.66 0.778222
Target:  5'- cCCUcGGGGGCGGCGGgcacgguggcGGGGUCGGCg- -3'
miRNA:   3'- aGGA-CCUCUGCUGCC----------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 92011 0.68 0.681709
Target:  5'- aCCaGGAGACGACcGAGGACaacGCg- -3'
miRNA:   3'- aGGaCCUCUGCUGcCUCCUGgu-CGac -5'
29416 3' -58.4 NC_006151.1 + 96705 0.7 0.561203
Target:  5'- gUCCgcgccGGGGGCGGCGGcGGACgAGgaGg -3'
miRNA:   3'- -AGGa----CCUCUGCUGCCuCCUGgUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 103215 0.74 0.370635
Target:  5'- aCgaGGAGacgcgcgugcgcGCGAUGGAGGACCuGCUGc -3'
miRNA:   3'- aGgaCCUC------------UGCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 103420 0.66 0.805096
Target:  5'- -gCUGGGccCGGCGGuGGACCuGCUc -3'
miRNA:   3'- agGACCUcuGCUGCCuCCUGGuCGAc -5'
29416 3' -58.4 NC_006151.1 + 104005 0.7 0.595147
Target:  5'- gCCgUGGAGGCGcgccgcgcgGCGGAGGuggagcgcgcgcagcGCCAGCUc -3'
miRNA:   3'- aGG-ACCUCUGC---------UGCCUCC---------------UGGUCGAc -5'
29416 3' -58.4 NC_006151.1 + 104564 0.66 0.813761
Target:  5'- cCCUGGGcgcGCGGCGcGcGGACguGCUGc -3'
miRNA:   3'- aGGACCUc--UGCUGC-CuCCUGguCGAC- -5'
29416 3' -58.4 NC_006151.1 + 105258 0.66 0.822265
Target:  5'- gCCUGG-GACGAggccugGGAGGACUuugGGCg- -3'
miRNA:   3'- aGGACCuCUGCUg-----CCUCCUGG---UCGac -5'
29416 3' -58.4 NC_006151.1 + 106478 0.66 0.813761
Target:  5'- cCCUGGGcGCacACGGAgacGGGCCAGCg- -3'
miRNA:   3'- aGGACCUcUGc-UGCCU---CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 106784 0.69 0.641502
Target:  5'- gCCUGGAccuggccgcGGCGGCGGugcucgucGGGGCCccGCUGg -3'
miRNA:   3'- aGGACCU---------CUGCUGCC--------UCCUGGu-CGAC- -5'
29416 3' -58.4 NC_006151.1 + 107182 1.08 0.002082
Target:  5'- uUCCUGGAGACGACGGAGGACCAGCUGc -3'
miRNA:   3'- -AGGACCUCUGCUGCCUCCUGGUCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.