miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 3735 0.68 0.681709
Target:  5'- gUCCgGGccGGCGGCGGGGGAgCUGGCg- -3'
miRNA:   3'- -AGGaCCu-CUGCUGCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 5039 0.66 0.822265
Target:  5'- gCCggGGAGgccGCGGCGGAGGAggaGGCg- -3'
miRNA:   3'- aGGa-CCUC---UGCUGCCUCCUgg-UCGac -5'
29416 3' -58.4 NC_006151.1 + 5843 0.66 0.822265
Target:  5'- gCCggGGAGGCuGCGGAgggGGACgAGCg- -3'
miRNA:   3'- aGGa-CCUCUGcUGCCU---CCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 5986 0.67 0.768998
Target:  5'- gCCugaUGGAGAgccCGAcCGGGGGAcCCGGCg- -3'
miRNA:   3'- aGG---ACCUCU---GCU-GCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 8206 0.71 0.512348
Target:  5'- cUCCgGGAGACGAa-GAGGGCCGGg-- -3'
miRNA:   3'- -AGGaCCUCUGCUgcCUCCUGGUCgac -5'
29416 3' -58.4 NC_006151.1 + 17232 0.7 0.560212
Target:  5'- -aCUGGAucccguuGAUGACGGAGGACCA-CUc -3'
miRNA:   3'- agGACCU-------CUGCUGCCUCCUGGUcGAc -5'
29416 3' -58.4 NC_006151.1 + 17817 0.7 0.57114
Target:  5'- cUCCUGGGcGCGGCGGGGcGGgCGGCc- -3'
miRNA:   3'- -AGGACCUcUGCUGCCUC-CUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 18044 0.75 0.310516
Target:  5'- gUCCUGGGGGCGcagcggggaGCGGggucccuugGGGGCCAGCa- -3'
miRNA:   3'- -AGGACCUCUGC---------UGCC---------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 30426 0.71 0.512348
Target:  5'- ---aGGGGAgGACGGAGGGCgAGCc- -3'
miRNA:   3'- aggaCCUCUgCUGCCUCCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 34360 0.72 0.438228
Target:  5'- cUCgUGGGGugGGagGGGGGACCGGgaGa -3'
miRNA:   3'- -AGgACCUCugCUg-CCUCCUGGUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 38597 0.68 0.681709
Target:  5'- cCCcGGGGACGGCgaGGAGGAcgaggggcucuCCGGCg- -3'
miRNA:   3'- aGGaCCUCUGCUG--CCUCCU-----------GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41640 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41703 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 49160 0.66 0.787318
Target:  5'- gCCUGGAGGCcugGGCGcgccgcGGGGugCuGCUGc -3'
miRNA:   3'- aGGACCUCUG---CUGC------CUCCugGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 56278 0.72 0.465337
Target:  5'- uUCCUGGAGaccugccccGCGGCGGAGGcggacGCCGcGCg- -3'
miRNA:   3'- -AGGACCUC---------UGCUGCCUCC-----UGGU-CGac -5'
29416 3' -58.4 NC_006151.1 + 57031 0.66 0.813761
Target:  5'- aUCCaGGgcaGGAUcaGCGGGGGGCgCAGCUGc -3'
miRNA:   3'- -AGGaCC---UCUGc-UGCCUCCUG-GUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 61772 0.68 0.711475
Target:  5'- gCCgUGGuGcuGCGGCGcGAGGccgGCCGGCUGg -3'
miRNA:   3'- aGG-ACCuC--UGCUGC-CUCC---UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 62170 0.71 0.512348
Target:  5'- cUCUGGaAGACGGCGGAGGccGCCcuGGCc- -3'
miRNA:   3'- aGGACC-UCUGCUGCCUCC--UGG--UCGac -5'
29416 3' -58.4 NC_006151.1 + 64848 0.69 0.641502
Target:  5'- cCCgGcGAGGgccuCGGCGGAGGGCC-GCUGc -3'
miRNA:   3'- aGGaC-CUCU----GCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 71278 0.77 0.252094
Target:  5'- cUCgUGGAGACGGCcucGGGGGCCGGCg- -3'
miRNA:   3'- -AGgACCUCUGCUGc--CUCCUGGUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.