miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 138133 0.81 0.143219
Target:  5'- gCCUGGccguGGACG-CGGAGGACCGGCg- -3'
miRNA:   3'- aGGACC----UCUGCuGCCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 135080 0.7 0.601177
Target:  5'- cUCCUcgggcGGGGGCGGCGGGgccGGGCgGGCg- -3'
miRNA:   3'- -AGGA-----CCUCUGCUGCCU---CCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 135003 0.68 0.671696
Target:  5'- gUCUUGGcggGGGCG-CGGGGGGgCAGCa- -3'
miRNA:   3'- -AGGACC---UCUGCuGCCUCCUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 134608 0.68 0.671696
Target:  5'- cCCUGGAGuCGggccaGCGcGuGGcCCAGCUGg -3'
miRNA:   3'- aGGACCUCuGC-----UGC-CuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 133980 0.68 0.671696
Target:  5'- cCCucggUGGAGACGauggaagagagcGCGGGGGccACCAGCg- -3'
miRNA:   3'- aGG----ACCUCUGC------------UGCCUCC--UGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 133498 0.66 0.822265
Target:  5'- cCUUGGcGGCG-CGGGGGGCgCGGgaGg -3'
miRNA:   3'- aGGACCuCUGCuGCCUCCUG-GUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 131503 0.67 0.740651
Target:  5'- aCCaGGAGccccGCG-CGGGGGAaCGGCUGg -3'
miRNA:   3'- aGGaCCUC----UGCuGCCUCCUgGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 130941 0.66 0.805096
Target:  5'- ---cGGGGGCGGCGGGGGgucgcGCgGGCg- -3'
miRNA:   3'- aggaCCUCUGCUGCCUCC-----UGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 121140 0.71 0.531702
Target:  5'- aUCCUGGc--CGACGGcGGGCC-GCUGg -3'
miRNA:   3'- -AGGACCucuGCUGCCuCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 110033 0.67 0.721277
Target:  5'- gCCUGGAgGACGAggaGGGGGACgAGg-- -3'
miRNA:   3'- aGGACCU-CUGCUg--CCUCCUGgUCgac -5'
29416 3' -58.4 NC_006151.1 + 108703 0.66 0.79092
Target:  5'- cUCCUGGAGcccccgggaguggugGCcagcgccgaggaGACGGuGGcCCGGCUGc -3'
miRNA:   3'- -AGGACCUC---------------UG------------CUGCCuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 107182 1.08 0.002082
Target:  5'- uUCCUGGAGACGACGGAGGACCAGCUGc -3'
miRNA:   3'- -AGGACCUCUGCUGCCUCCUGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 106784 0.69 0.641502
Target:  5'- gCCUGGAccuggccgcGGCGGCGGugcucgucGGGGCCccGCUGg -3'
miRNA:   3'- aGGACCU---------CUGCUGCC--------UCCUGGu-CGAC- -5'
29416 3' -58.4 NC_006151.1 + 106478 0.66 0.813761
Target:  5'- cCCUGGGcGCacACGGAgacGGGCCAGCg- -3'
miRNA:   3'- aGGACCUcUGc-UGCCU---CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 105258 0.66 0.822265
Target:  5'- gCCUGG-GACGAggccugGGAGGACUuugGGCg- -3'
miRNA:   3'- aGGACCuCUGCUg-----CCUCCUGG---UCGac -5'
29416 3' -58.4 NC_006151.1 + 104564 0.66 0.813761
Target:  5'- cCCUGGGcgcGCGGCGcGcGGACguGCUGc -3'
miRNA:   3'- aGGACCUc--UGCUGC-CuCCUGguCGAC- -5'
29416 3' -58.4 NC_006151.1 + 104005 0.7 0.595147
Target:  5'- gCCgUGGAGGCGcgccgcgcgGCGGAGGuggagcgcgcgcagcGCCAGCUc -3'
miRNA:   3'- aGG-ACCUCUGC---------UGCCUCC---------------UGGUCGAc -5'
29416 3' -58.4 NC_006151.1 + 103420 0.66 0.805096
Target:  5'- -gCUGGGccCGGCGGuGGACCuGCUc -3'
miRNA:   3'- agGACCUcuGCUGCCuCCUGGuCGAc -5'
29416 3' -58.4 NC_006151.1 + 103215 0.74 0.370635
Target:  5'- aCgaGGAGacgcgcgugcgcGCGAUGGAGGACCuGCUGc -3'
miRNA:   3'- aGgaCCUC------------UGCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 96705 0.7 0.561203
Target:  5'- gUCCgcgccGGGGGCGGCGGcGGACgAGgaGg -3'
miRNA:   3'- -AGGa----CCUCUGCUGCCuCCUGgUCgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.