miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 92011 0.68 0.681709
Target:  5'- aCCaGGAGACGACcGAGGACaacGCg- -3'
miRNA:   3'- aGGaCCUCUGCUGcCUCCUGgu-CGac -5'
29416 3' -58.4 NC_006151.1 + 90750 0.66 0.778222
Target:  5'- cCCUcGGGGGCGGCGGgcacgguggcGGGGUCGGCg- -3'
miRNA:   3'- aGGA-CCUCUGCUGCC----------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 86128 0.66 0.79539
Target:  5'- aCCUGGcccuguacgauagGGACGGCGG-GGAgCucgcGCUGa -3'
miRNA:   3'- aGGACC-------------UCUGCUGCCuCCUgGu---CGAC- -5'
29416 3' -58.4 NC_006151.1 + 85142 0.69 0.621323
Target:  5'- aCCUGGuGcaccgcguGCGGCaGGGGGCCGGCg- -3'
miRNA:   3'- aGGACCuC--------UGCUGcCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 82681 0.66 0.796279
Target:  5'- gCCgcgGGcgaGGGCGGCGGcccccgcgAGGGCCAGgaGg -3'
miRNA:   3'- aGGa--CC---UCUGCUGCC--------UCCUGGUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 82461 0.69 0.651584
Target:  5'- aCCacgcGGAGACgGGCGGGGGcACCAcCUGg -3'
miRNA:   3'- aGGa---CCUCUG-CUGCCUCC-UGGUcGAC- -5'
29416 3' -58.4 NC_006151.1 + 75019 0.66 0.813761
Target:  5'- aCCUGGGGcACGGCGaAGGGCCcGggGa -3'
miRNA:   3'- aGGACCUC-UGCUGCcUCCUGGuCgaC- -5'
29416 3' -58.4 NC_006151.1 + 73571 0.71 0.501828
Target:  5'- gUCCUGGcgcaccaccgucaGGGCGAagcCGG-GGugCAGCUGg -3'
miRNA:   3'- -AGGACC-------------UCUGCU---GCCuCCugGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 71770 0.76 0.2893
Target:  5'- gUCCUGcGGcagcGGCGGCGGGGGcugccgcACCAGCUGg -3'
miRNA:   3'- -AGGAC-CU----CUGCUGCCUCC-------UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 71635 0.69 0.621323
Target:  5'- gCCgggGGGGACGGuCGGGGGGCCGuCg- -3'
miRNA:   3'- aGGa--CCUCUGCU-GCCUCCUGGUcGac -5'
29416 3' -58.4 NC_006151.1 + 71562 0.66 0.796279
Target:  5'- ---gGGGGGCGA-GGGGGACgGGCg- -3'
miRNA:   3'- aggaCCUCUGCUgCCUCCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 71278 0.77 0.252094
Target:  5'- cUCgUGGAGACGGCcucGGGGGCCGGCg- -3'
miRNA:   3'- -AGgACCUCUGCUGc--CUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 64848 0.69 0.641502
Target:  5'- cCCgGcGAGGgccuCGGCGGAGGGCC-GCUGc -3'
miRNA:   3'- aGGaC-CUCU----GCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 62170 0.71 0.512348
Target:  5'- cUCUGGaAGACGGCGGAGGccGCCcuGGCc- -3'
miRNA:   3'- aGGACC-UCUGCUGCCUCC--UGG--UCGac -5'
29416 3' -58.4 NC_006151.1 + 61772 0.68 0.711475
Target:  5'- gCCgUGGuGcuGCGGCGcGAGGccgGCCGGCUGg -3'
miRNA:   3'- aGG-ACCuC--UGCUGC-CUCC---UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 57031 0.66 0.813761
Target:  5'- aUCCaGGgcaGGAUcaGCGGGGGGCgCAGCUGc -3'
miRNA:   3'- -AGGaCC---UCUGc-UGCCUCCUG-GUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 56278 0.72 0.465337
Target:  5'- uUCCUGGAGaccugccccGCGGCGGAGGcggacGCCGcGCg- -3'
miRNA:   3'- -AGGACCUC---------UGCUGCCUCC-----UGGU-CGac -5'
29416 3' -58.4 NC_006151.1 + 49160 0.66 0.787318
Target:  5'- gCCUGGAGGCcugGGCGcgccgcGGGGugCuGCUGc -3'
miRNA:   3'- aGGACCUCUG---CUGC------CUCCugGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 41703 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41640 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.