miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 107182 1.08 0.002082
Target:  5'- uUCCUGGAGACGACGGAGGACCAGCUGc -3'
miRNA:   3'- -AGGACCUCUGCUGCCUCCUGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 138133 0.81 0.143219
Target:  5'- gCCUGGccguGGACG-CGGAGGACCGGCg- -3'
miRNA:   3'- aGGACC----UCUGCuGCCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 71278 0.77 0.252094
Target:  5'- cUCgUGGAGACGGCcucGGGGGCCGGCg- -3'
miRNA:   3'- -AGgACCUCUGCUGc--CUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 71770 0.76 0.2893
Target:  5'- gUCCUGcGGcagcGGCGGCGGGGGcugccgcACCAGCUGg -3'
miRNA:   3'- -AGGAC-CU----CUGCUGCCUCC-------UGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 18044 0.75 0.310516
Target:  5'- gUCCUGGGGGCGcagcggggaGCGGggucccuugGGGGCCAGCa- -3'
miRNA:   3'- -AGGACCUCUGC---------UGCC---------UCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 103215 0.74 0.370635
Target:  5'- aCgaGGAGacgcgcgugcgcGCGAUGGAGGACCuGCUGc -3'
miRNA:   3'- aGgaCCUC------------UGCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 34360 0.72 0.438228
Target:  5'- cUCgUGGGGugGGagGGGGGACCGGgaGa -3'
miRNA:   3'- -AGgACCUCugCUg-CCUCCUGGUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 56278 0.72 0.465337
Target:  5'- uUCCUGGAGaccugccccGCGGCGGAGGcggacGCCGcGCg- -3'
miRNA:   3'- -AGGACCUC---------UGCUGCCUCC-----UGGU-CGac -5'
29416 3' -58.4 NC_006151.1 + 73571 0.71 0.501828
Target:  5'- gUCCUGGcgcaccaccgucaGGGCGAagcCGG-GGugCAGCUGg -3'
miRNA:   3'- -AGGACC-------------UCUGCU---GCCuCCugGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 8206 0.71 0.512348
Target:  5'- cUCCgGGAGACGAa-GAGGGCCGGg-- -3'
miRNA:   3'- -AGGaCCUCUGCUgcCUCCUGGUCgac -5'
29416 3' -58.4 NC_006151.1 + 62170 0.71 0.512348
Target:  5'- cUCUGGaAGACGGCGGAGGccGCCcuGGCc- -3'
miRNA:   3'- aGGACC-UCUGCUGCCUCC--UGG--UCGac -5'
29416 3' -58.4 NC_006151.1 + 30426 0.71 0.512348
Target:  5'- ---aGGGGAgGACGGAGGGCgAGCc- -3'
miRNA:   3'- aggaCCUCUgCUGCCUCCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 121140 0.71 0.531702
Target:  5'- aUCCUGGc--CGACGGcGGGCC-GCUGg -3'
miRNA:   3'- -AGGACCucuGCUGCCuCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 17232 0.7 0.560212
Target:  5'- -aCUGGAucccguuGAUGACGGAGGACCA-CUc -3'
miRNA:   3'- agGACCU-------CUGCUGCCUCCUGGUcGAc -5'
29416 3' -58.4 NC_006151.1 + 96705 0.7 0.561203
Target:  5'- gUCCgcgccGGGGGCGGCGGcGGACgAGgaGg -3'
miRNA:   3'- -AGGa----CCUCUGCUGCCuCCUGgUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 17817 0.7 0.57114
Target:  5'- cUCCUGGGcGCGGCGGGGcGGgCGGCc- -3'
miRNA:   3'- -AGGACCUcUGCUGCCUC-CUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 104005 0.7 0.595147
Target:  5'- gCCgUGGAGGCGcgccgcgcgGCGGAGGuggagcgcgcgcagcGCCAGCUc -3'
miRNA:   3'- aGG-ACCUCUGC---------UGCCUCC---------------UGGUCGAc -5'
29416 3' -58.4 NC_006151.1 + 135080 0.7 0.601177
Target:  5'- cUCCUcgggcGGGGGCGGCGGGgccGGGCgGGCg- -3'
miRNA:   3'- -AGGA-----CCUCUGCUGCCU---CCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 85142 0.69 0.621323
Target:  5'- aCCUGGuGcaccgcguGCGGCaGGGGGCCGGCg- -3'
miRNA:   3'- aGGACCuC--------UGCUGcCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 71635 0.69 0.621323
Target:  5'- gCCgggGGGGACGGuCGGGGGGCCGuCg- -3'
miRNA:   3'- aGGa--CCUCUGCU-GCCUCCUGGUcGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.