miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 3' -58.4 NC_006151.1 + 3735 0.68 0.681709
Target:  5'- gUCCgGGccGGCGGCGGGGGAgCUGGCg- -3'
miRNA:   3'- -AGGaCCu-CUGCUGCCUCCU-GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 38597 0.68 0.681709
Target:  5'- cCCcGGGGACGGCgaGGAGGAcgaggggcucuCCGGCg- -3'
miRNA:   3'- aGGaCCUCUGCUG--CCUCCU-----------GGUCGac -5'
29416 3' -58.4 NC_006151.1 + 92011 0.68 0.681709
Target:  5'- aCCaGGAGACGACcGAGGACaacGCg- -3'
miRNA:   3'- aGGaCCUCUGCUGcCUCCUGgu-CGac -5'
29416 3' -58.4 NC_006151.1 + 134608 0.68 0.671696
Target:  5'- cCCUGGAGuCGggccaGCGcGuGGcCCAGCUGg -3'
miRNA:   3'- aGGACCUCuGC-----UGC-CuCCuGGUCGAC- -5'
29416 3' -58.4 NC_006151.1 + 133980 0.68 0.671696
Target:  5'- cCCucggUGGAGACGauggaagagagcGCGGGGGccACCAGCg- -3'
miRNA:   3'- aGG----ACCUCUGC------------UGCCUCC--UGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 135003 0.68 0.671696
Target:  5'- gUCUUGGcggGGGCG-CGGGGGGgCAGCa- -3'
miRNA:   3'- -AGGACC---UCUGCuGCCUCCUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41640 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 41703 0.69 0.651584
Target:  5'- gUCCgGGGGAa-GCGGAagGGGCCGGCg- -3'
miRNA:   3'- -AGGaCCUCUgcUGCCU--CCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 82461 0.69 0.651584
Target:  5'- aCCacgcGGAGACgGGCGGGGGcACCAcCUGg -3'
miRNA:   3'- aGGa---CCUCUG-CUGCCUCC-UGGUcGAC- -5'
29416 3' -58.4 NC_006151.1 + 64848 0.69 0.641502
Target:  5'- cCCgGcGAGGgccuCGGCGGAGGGCC-GCUGc -3'
miRNA:   3'- aGGaC-CUCU----GCUGCCUCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 106784 0.69 0.641502
Target:  5'- gCCUGGAccuggccgcGGCGGCGGugcucgucGGGGCCccGCUGg -3'
miRNA:   3'- aGGACCU---------CUGCUGCC--------UCCUGGu-CGAC- -5'
29416 3' -58.4 NC_006151.1 + 85142 0.69 0.621323
Target:  5'- aCCUGGuGcaccgcguGCGGCaGGGGGCCGGCg- -3'
miRNA:   3'- aGGACCuC--------UGCUGcCUCCUGGUCGac -5'
29416 3' -58.4 NC_006151.1 + 71635 0.69 0.621323
Target:  5'- gCCgggGGGGACGGuCGGGGGGCCGuCg- -3'
miRNA:   3'- aGGa--CCUCUGCU-GCCUCCUGGUcGac -5'
29416 3' -58.4 NC_006151.1 + 135080 0.7 0.601177
Target:  5'- cUCCUcgggcGGGGGCGGCGGGgccGGGCgGGCg- -3'
miRNA:   3'- -AGGA-----CCUCUGCUGCCU---CCUGgUCGac -5'
29416 3' -58.4 NC_006151.1 + 104005 0.7 0.595147
Target:  5'- gCCgUGGAGGCGcgccgcgcgGCGGAGGuggagcgcgcgcagcGCCAGCUc -3'
miRNA:   3'- aGG-ACCUCUGC---------UGCCUCC---------------UGGUCGAc -5'
29416 3' -58.4 NC_006151.1 + 17817 0.7 0.57114
Target:  5'- cUCCUGGGcGCGGCGGGGcGGgCGGCc- -3'
miRNA:   3'- -AGGACCUcUGCUGCCUC-CUgGUCGac -5'
29416 3' -58.4 NC_006151.1 + 96705 0.7 0.561203
Target:  5'- gUCCgcgccGGGGGCGGCGGcGGACgAGgaGg -3'
miRNA:   3'- -AGGa----CCUCUGCUGCCuCCUGgUCgaC- -5'
29416 3' -58.4 NC_006151.1 + 17232 0.7 0.560212
Target:  5'- -aCUGGAucccguuGAUGACGGAGGACCA-CUc -3'
miRNA:   3'- agGACCU-------CUGCUGCCUCCUGGUcGAc -5'
29416 3' -58.4 NC_006151.1 + 121140 0.71 0.531702
Target:  5'- aUCCUGGc--CGACGGcGGGCC-GCUGg -3'
miRNA:   3'- -AGGACCucuGCUGCCuCCUGGuCGAC- -5'
29416 3' -58.4 NC_006151.1 + 8206 0.71 0.512348
Target:  5'- cUCCgGGAGACGAa-GAGGGCCGGg-- -3'
miRNA:   3'- -AGGaCCUCUGCUgcCUCCUGGUCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.