miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 38318 0.68 0.6196
Target:  5'- gCCCGCGGAgCCCGCgcccgGCCUgCCc -3'
miRNA:   3'- gGGGCGCCU-GGGCGacaagUGGA-GGu -5'
29416 5' -60.5 NC_006151.1 + 131341 0.68 0.609734
Target:  5'- cCCCCGCGccggccCCCGCUcGUccUCuCCUCCu -3'
miRNA:   3'- -GGGGCGCcu----GGGCGA-CA--AGuGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 100594 0.68 0.609734
Target:  5'- gUCCUGCGG-CCCGUggagCGCUUCCu -3'
miRNA:   3'- -GGGGCGCCuGGGCGacaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 56117 0.68 0.608748
Target:  5'- gCCUCGcCGGGgaggccuUCCGCggGUUCGCCUUCGc -3'
miRNA:   3'- -GGGGC-GCCU-------GGGCGa-CAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 8293 0.68 0.599883
Target:  5'- cCCCgCGCGGGCgCCGCguccCGCC-CCGa -3'
miRNA:   3'- -GGG-GCGCCUG-GGCGacaaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 28319 0.68 0.599883
Target:  5'- uCCCCGgGGcGCCCGCccccgggGUUCGaucCCUUCGg -3'
miRNA:   3'- -GGGGCgCC-UGGGCGa------CAAGU---GGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 73207 0.68 0.599883
Target:  5'- gCCCGCGGgccagGCCCGC-GggCACCUg-- -3'
miRNA:   3'- gGGGCGCC-----UGGGCGaCaaGUGGAggu -5'
29416 5' -60.5 NC_006151.1 + 130196 0.68 0.599883
Target:  5'- uCCUCGgGGuGCCCGCUGaggacgcgCAgCUCCGg -3'
miRNA:   3'- -GGGGCgCC-UGGGCGACaa------GUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 52378 0.68 0.590055
Target:  5'- cCCCCG-GGGCCCGCgggGgcggcgggCGCCgCCGc -3'
miRNA:   3'- -GGGGCgCCUGGGCGa--Caa------GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 106517 0.68 0.590055
Target:  5'- gCCgUGcCGGGCgCGCUGgcCACCUUCAc -3'
miRNA:   3'- -GGgGC-GCCUGgGCGACaaGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 55070 0.68 0.590055
Target:  5'- aCCCgGCGGGCucggCCGCgGcgCGCCUCg- -3'
miRNA:   3'- -GGGgCGCCUG----GGCGaCaaGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 47087 0.68 0.590055
Target:  5'- gCUCC-CGGcCCCGCac-UCACCUCCGc -3'
miRNA:   3'- -GGGGcGCCuGGGCGacaAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 49342 0.68 0.580255
Target:  5'- gCCUGCgcgccGGACCCGCgccgccacaagGUgcUCACCUUCAg -3'
miRNA:   3'- gGGGCG-----CCUGGGCGa----------CA--AGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 75263 0.68 0.580255
Target:  5'- cCUCCGCGGGCUC-CUGgcgcagCGCCgCCAg -3'
miRNA:   3'- -GGGGCGCCUGGGcGACaa----GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 40158 0.68 0.580255
Target:  5'- gCCCCGCGG-CCCGCUcGggC-CCaUCAa -3'
miRNA:   3'- -GGGGCGCCuGGGCGA-CaaGuGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 61435 0.68 0.580255
Target:  5'- cCCgCCGCGGcGCCCGCccgcGUcCGCCgCCAu -3'
miRNA:   3'- -GG-GGCGCC-UGGGCGa---CAaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 109819 0.68 0.580255
Target:  5'- gCCCCGCGcucCCCGCUGgcggACCcCCAc -3'
miRNA:   3'- -GGGGCGCcu-GGGCGACaag-UGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 102004 0.69 0.57049
Target:  5'- gCCCGCGcACCCGCgagcccauggGcUUCGCCgUCCGg -3'
miRNA:   3'- gGGGCGCcUGGGCGa---------C-AAGUGG-AGGU- -5'
29416 5' -60.5 NC_006151.1 + 65493 0.69 0.57049
Target:  5'- aCgCCGCGGACgCCgGCggaGcgCGCCUCCu -3'
miRNA:   3'- -GgGGCGCCUG-GG-CGa--CaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 119130 0.69 0.560765
Target:  5'- gCCUCGUggGGGCgCUGgUGUUCAgCUCCAa -3'
miRNA:   3'- -GGGGCG--CCUG-GGCgACAAGUgGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.