miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 104218 0.67 0.678731
Target:  5'- aCCacggCGCuGGACgCCG-UGUUCGCCUUCAa -3'
miRNA:   3'- -GGg---GCG-CCUG-GGCgACAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 38720 0.67 0.678731
Target:  5'- gCCCGCuccGGACCCcgcucccgcgcuGCUGUcCuCCUCCu -3'
miRNA:   3'- gGGGCG---CCUGGG------------CGACAaGuGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 127397 0.67 0.675791
Target:  5'- -gCCGCGGccgagucgacgggaGCCCGCggggUCGCCUCg- -3'
miRNA:   3'- ggGGCGCC--------------UGGGCGaca-AGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 87334 0.67 0.66892
Target:  5'- gCUCC-CGGGCCUGCcGg--GCCUCCAg -3'
miRNA:   3'- -GGGGcGCCUGGGCGaCaagUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 107539 0.67 0.66892
Target:  5'- gCCCCgGCGGcCCCGCcGgcgcCGCCgcccgCCAa -3'
miRNA:   3'- -GGGG-CGCCuGGGCGaCaa--GUGGa----GGU- -5'
29416 5' -60.5 NC_006151.1 + 78517 0.67 0.66892
Target:  5'- cCCCCgcgaucGCGGACCCGgCgggGgccUCGCCgCCGa -3'
miRNA:   3'- -GGGG------CGCCUGGGC-Ga--Ca--AGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 125219 0.67 0.66892
Target:  5'- cCCCCGCGGccGCCCGUcGggCccgGCgCUCCc -3'
miRNA:   3'- -GGGGCGCC--UGGGCGaCaaG---UG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 27219 0.67 0.659082
Target:  5'- gCCCCGCGcGCCguggaCGCg---CACCUCCu -3'
miRNA:   3'- -GGGGCGCcUGG-----GCGacaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 10617 0.67 0.659082
Target:  5'- uCCCCGCGcGCCCGCgug-CGCUcgugCCGg -3'
miRNA:   3'- -GGGGCGCcUGGGCGacaaGUGGa---GGU- -5'
29416 5' -60.5 NC_006151.1 + 39876 0.67 0.659082
Target:  5'- gCCCCGaGGGCCUGCcggccgaguUGcgCGCCUUCu -3'
miRNA:   3'- -GGGGCgCCUGGGCG---------ACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 30918 0.67 0.659082
Target:  5'- gCCCGCGGgcgGCCCGCgcgGaUCGCC-Cg- -3'
miRNA:   3'- gGGGCGCC---UGGGCGa--CaAGUGGaGgu -5'
29416 5' -60.5 NC_006151.1 + 99755 0.67 0.656126
Target:  5'- gCCgCCGCGGACCuCGUgaacuacccguccaUGgugCACCUCgAg -3'
miRNA:   3'- -GG-GGCGCCUGG-GCG--------------ACaa-GUGGAGgU- -5'
29416 5' -60.5 NC_006151.1 + 39646 0.67 0.649223
Target:  5'- gCCCCGgacccCGGuCCCGCUGccgccgcgCGCCUaCCGc -3'
miRNA:   3'- -GGGGC-----GCCuGGGCGACaa------GUGGA-GGU- -5'
29416 5' -60.5 NC_006151.1 + 49284 0.67 0.649223
Target:  5'- gCUCUGCGaGACCCGCcccaagcuggUGUUCAUgCUCUg -3'
miRNA:   3'- -GGGGCGC-CUGGGCG----------ACAAGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 128135 0.67 0.649223
Target:  5'- gCUCCGUGGGCCCGCcGUaCGaggCCAg -3'
miRNA:   3'- -GGGGCGCCUGGGCGaCAaGUggaGGU- -5'
29416 5' -60.5 NC_006151.1 + 11354 0.67 0.648236
Target:  5'- gCCCGCGGGCgcuaccgcgcgcuCCGCUcgcCGCCUCUu -3'
miRNA:   3'- gGGGCGCCUG-------------GGCGAcaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 117019 0.68 0.629475
Target:  5'- cCCCCGCGGGCCCgggccGCaGgcggUACCagCCGa -3'
miRNA:   3'- -GGGGCGCCUGGG-----CGaCaa--GUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 31830 0.68 0.629475
Target:  5'- uCCCCGcCGGccucggcccACCCGCggcgUCACC-CCGc -3'
miRNA:   3'- -GGGGC-GCC---------UGGGCGaca-AGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 82956 0.68 0.629475
Target:  5'- gCCguaCGCGGACUC-Cg--UCACCUCCAu -3'
miRNA:   3'- -GGg--GCGCCUGGGcGacaAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 39576 0.68 0.629475
Target:  5'- aCCCCGgGGccgAgCCGCUG--CGCCUCUg -3'
miRNA:   3'- -GGGGCgCC---UgGGCGACaaGUGGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.