miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 136635 0.72 0.397951
Target:  5'- aCCCCGCGGcGCCCGUggGgcgcUCGCC-CCu -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-Ca---AGUGGaGGu -5'
29416 5' -60.5 NC_006151.1 + 25447 0.71 0.419638
Target:  5'- uCCCCGCGGccGCCCGCcccccccuggCGCCaUCCGa -3'
miRNA:   3'- -GGGGCGCC--UGGGCGacaa------GUGG-AGGU- -5'
29416 5' -60.5 NC_006151.1 + 109125 0.7 0.466873
Target:  5'- gCCCGCGcccGCCgGCcGggCACCUCCGu -3'
miRNA:   3'- gGGGCGCc--UGGgCGaCaaGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 136359 0.7 0.466873
Target:  5'- aCCCCGCGGGgCUGCUcucGUUCGCggcgCUCUc -3'
miRNA:   3'- -GGGGCGCCUgGGCGA---CAAGUG----GAGGu -5'
29416 5' -60.5 NC_006151.1 + 137958 0.7 0.493347
Target:  5'- cCCCCGgGcuucgacGACCCGCgcaacuUUCACUUCCAc -3'
miRNA:   3'- -GGGGCgC-------CUGGGCGac----AAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 85292 0.7 0.494272
Target:  5'- aCCCGCGcGugCCGCgcgagCAgCUCCAc -3'
miRNA:   3'- gGGGCGC-CugGGCGacaa-GUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 37180 0.7 0.494272
Target:  5'- cCCgCCGCGGcCCCGCggcccUCGgCCUCCu -3'
miRNA:   3'- -GG-GGCGCCuGGGCGaca--AGU-GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 80517 0.7 0.494272
Target:  5'- cCCCCGUGGAuggcgcucCCCGCa--UCcCCUCCAc -3'
miRNA:   3'- -GGGGCGCCU--------GGGCGacaAGuGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 109487 0.7 0.503568
Target:  5'- cCCCCGCGG-CUCa-UGUUCacACCUCCGc -3'
miRNA:   3'- -GGGGCGCCuGGGcgACAAG--UGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 37321 0.7 0.511999
Target:  5'- cCCCCGCcGACcgacgggCCGCUGcUCACC-CCGc -3'
miRNA:   3'- -GGGGCGcCUG-------GGCGACaAGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 131260 0.7 0.512939
Target:  5'- uCCCCGuCGGACCaCGCgccccccUCGCuCUCCu -3'
miRNA:   3'- -GGGGC-GCCUGG-GCGaca----AGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 2199 0.7 0.512939
Target:  5'- cCCCCGCGGGCCgGUggGUcuccacggCGCCcCCGg -3'
miRNA:   3'- -GGGGCGCCUGGgCGa-CAa-------GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 7631 0.69 0.529031
Target:  5'- cCCCCGCGGucgccccACCCGCgccucgcgcucgGcgCGCgCUCCGa -3'
miRNA:   3'- -GGGGCGCC-------UGGGCGa-----------CaaGUG-GAGGU- -5'
29416 5' -60.5 NC_006151.1 + 102054 0.69 0.530936
Target:  5'- gCCCCGCucgaccuGGGCCCGCUGcagGCCcacgCCGa -3'
miRNA:   3'- -GGGGCG-------CCUGGGCGACaagUGGa---GGU- -5'
29416 5' -60.5 NC_006151.1 + 48574 0.69 0.53189
Target:  5'- aCCCUGCGGccugccGCCCGggGUgCGCCUCg- -3'
miRNA:   3'- -GGGGCGCC------UGGGCgaCAaGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 124933 0.69 0.53189
Target:  5'- aCgUCGCGGGCCC--UGggCGCCUCCu -3'
miRNA:   3'- -GgGGCGCCUGGGcgACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 82521 0.69 0.54146
Target:  5'- gCCCGCGGAUgCGCgUGUcguugagCGCCcCCAg -3'
miRNA:   3'- gGGGCGCCUGgGCG-ACAa------GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 134750 0.69 0.54723
Target:  5'- gCCCCGagcagcgcgcgcgGGGCCCGCgGcUUCGgCUCCAc -3'
miRNA:   3'- -GGGGCg------------CCUGGGCGaC-AAGUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 109607 0.69 0.550122
Target:  5'- aCCCCGCcgccgucGGACCCGCcgGUcCAgUUCCc -3'
miRNA:   3'- -GGGGCG-------CCUGGGCGa-CAaGUgGAGGu -5'
29416 5' -60.5 NC_006151.1 + 21361 0.69 0.551087
Target:  5'- gCUCCGCGGgcugcggccACCCGCUGggCACgacggCCGg -3'
miRNA:   3'- -GGGGCGCC---------UGGGCGACaaGUGga---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.