miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 107219 1.1 0.001055
Target:  5'- aCCCCGCGGACCCGCUGUUCACCUCCAu -3'
miRNA:   3'- -GGGGCGCCUGGGCGACAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 141660 0.8 0.127283
Target:  5'- gCCCCGCGGGCUCGUUGUggaggcaugUCuGCCUCCc -3'
miRNA:   3'- -GGGGCGCCUGGGCGACA---------AG-UGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 84457 0.79 0.140651
Target:  5'- cCCCCGCgccauGGACCgCGCgugGUUCGCCUUCGa -3'
miRNA:   3'- -GGGGCG-----CCUGG-GCGa--CAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 71588 0.78 0.175529
Target:  5'- cCUCCGCGGGCgCCGCgucGUcaCACCUCCAc -3'
miRNA:   3'- -GGGGCGCCUG-GGCGa--CAa-GUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 100133 0.76 0.223112
Target:  5'- uCCUCGgGGACCUGCUGgcacgCGcCCUCCGg -3'
miRNA:   3'- -GGGGCgCCUGGGCGACaa---GU-GGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 45937 0.75 0.25665
Target:  5'- -aCCGCcuGCCCGCUGUgcaaugcccgcgUCACCUCCAu -3'
miRNA:   3'- ggGGCGccUGGGCGACA------------AGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 67348 0.75 0.25665
Target:  5'- uCCCCGaCGGcGCgCGCagcaccaucgUGUUCGCCUCCAg -3'
miRNA:   3'- -GGGGC-GCC-UGgGCG----------ACAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 13659 0.74 0.294206
Target:  5'- aCCCCGCGGcACCCGCcuccggGgacgCGCCggCCAa -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-----Caa--GUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 13378 0.74 0.294206
Target:  5'- aCCCCGCGGcACCCGCcuccggGgacgCGCCggCCAa -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-----Caa--GUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 66067 0.74 0.314535
Target:  5'- aCCCCGCGGACggCCGCcUGg--GCUUCCAc -3'
miRNA:   3'- -GGGGCGCCUG--GGCG-ACaagUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 138495 0.74 0.314535
Target:  5'- uCCUCgGCGGgcGCCCGCUG--CACCUCCu -3'
miRNA:   3'- -GGGG-CGCC--UGGGCGACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 86196 0.73 0.343265
Target:  5'- cCCCCgGCGGGCCCGCUGccCAUCaaCAu -3'
miRNA:   3'- -GGGG-CGCCUGGGCGACaaGUGGagGU- -5'
29416 5' -60.5 NC_006151.1 + 15926 0.73 0.350737
Target:  5'- gCCCCgugagGCGGGCCucgccccgCGCUGUUCuuuCCUCCc -3'
miRNA:   3'- -GGGG-----CGCCUGG--------GCGACAAGu--GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 123350 0.72 0.373839
Target:  5'- aCCCCGUGGACgCCGCgc-UC-CUUCCGg -3'
miRNA:   3'- -GGGGCGCCUG-GGCGacaAGuGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 93052 0.72 0.381765
Target:  5'- cCCCCGCGGGCcacuccguCCGCgggcuccGUcUCACCUCUg -3'
miRNA:   3'- -GGGGCGCCUG--------GGCGa------CA-AGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 113552 0.72 0.389803
Target:  5'- gCgCCGCGGGCCCGCg---CGCCgUCUAc -3'
miRNA:   3'- -GgGGCGCCUGGGCGacaaGUGG-AGGU- -5'
29416 5' -60.5 NC_006151.1 + 56234 0.72 0.389803
Target:  5'- gCCCCGaGGACCCGaCggaGUUCGCgCUCUg -3'
miRNA:   3'- -GGGGCgCCUGGGC-Ga--CAAGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 57643 0.72 0.389803
Target:  5'- aCCCCGuuGGCCagcgcgaugaCGCUGUgguaCGCCUCCGg -3'
miRNA:   3'- -GGGGCgcCUGG----------GCGACAa---GUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 51219 0.72 0.393049
Target:  5'- gCCCGCGGGCCCGCgcagGcggCGCgagcgcucggcgcagCUCCAg -3'
miRNA:   3'- gGGGCGCCUGGGCGa---Caa-GUG---------------GAGGU- -5'
29416 5' -60.5 NC_006151.1 + 125586 0.72 0.395495
Target:  5'- gCCCggcgagCGCGGcacgugcuacagccGCCCGCUGgUCACCUUCGa -3'
miRNA:   3'- -GGG------GCGCC--------------UGGGCGACaAGUGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.