miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 2199 0.7 0.512939
Target:  5'- cCCCCGCGGGCCgGUggGUcuccacggCGCCcCCGg -3'
miRNA:   3'- -GGGGCGCCUGGgCGa-CAa-------GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 7631 0.69 0.529031
Target:  5'- cCCCCGCGGucgccccACCCGCgccucgcgcucgGcgCGCgCUCCGa -3'
miRNA:   3'- -GGGGCGCC-------UGGGCGa-----------CaaGUG-GAGGU- -5'
29416 5' -60.5 NC_006151.1 + 8293 0.68 0.599883
Target:  5'- cCCCgCGCGGGCgCCGCguccCGCC-CCGa -3'
miRNA:   3'- -GGG-GCGCCUG-GGCGacaaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 10617 0.67 0.659082
Target:  5'- uCCCCGCGcGCCCGCgug-CGCUcgugCCGg -3'
miRNA:   3'- -GGGGCGCcUGGGCGacaaGUGGa---GGU- -5'
29416 5' -60.5 NC_006151.1 + 11354 0.67 0.648236
Target:  5'- gCCCGCGGGCgcuaccgcgcgcuCCGCUcgcCGCCUCUu -3'
miRNA:   3'- gGGGCGCCUG-------------GGCGAcaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 13378 0.74 0.294206
Target:  5'- aCCCCGCGGcACCCGCcuccggGgacgCGCCggCCAa -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-----Caa--GUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 13659 0.74 0.294206
Target:  5'- aCCCCGCGGcACCCGCcuccggGgacgCGCCggCCAa -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-----Caa--GUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 15926 0.73 0.350737
Target:  5'- gCCCCgugagGCGGGCCucgccccgCGCUGUUCuuuCCUCCc -3'
miRNA:   3'- -GGGG-----CGCCUGG--------GCGACAAGu--GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 21361 0.69 0.551087
Target:  5'- gCUCCGCGGgcugcggccACCCGCUGggCACgacggCCGg -3'
miRNA:   3'- -GGGGCGCC---------UGGGCGACaaGUGga---GGU- -5'
29416 5' -60.5 NC_006151.1 + 25447 0.71 0.419638
Target:  5'- uCCCCGCGGccGCCCGCcccccccuggCGCCaUCCGa -3'
miRNA:   3'- -GGGGCGCC--UGGGCGacaa------GUGG-AGGU- -5'
29416 5' -60.5 NC_006151.1 + 27219 0.67 0.659082
Target:  5'- gCCCCGCGcGCCguggaCGCg---CACCUCCu -3'
miRNA:   3'- -GGGGCGCcUGG-----GCGacaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 28319 0.68 0.599883
Target:  5'- uCCCCGgGGcGCCCGCccccgggGUUCGaucCCUUCGg -3'
miRNA:   3'- -GGGGCgCC-UGGGCGa------CAAGU---GGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 30918 0.67 0.659082
Target:  5'- gCCCGCGGgcgGCCCGCgcgGaUCGCC-Cg- -3'
miRNA:   3'- gGGGCGCC---UGGGCGa--CaAGUGGaGgu -5'
29416 5' -60.5 NC_006151.1 + 31830 0.68 0.629475
Target:  5'- uCCCCGcCGGccucggcccACCCGCggcgUCACC-CCGc -3'
miRNA:   3'- -GGGGC-GCC---------UGGGCGaca-AGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 37180 0.7 0.494272
Target:  5'- cCCgCCGCGGcCCCGCggcccUCGgCCUCCu -3'
miRNA:   3'- -GG-GGCGCCuGGGCGaca--AGU-GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 37321 0.7 0.511999
Target:  5'- cCCCCGCcGACcgacgggCCGCUGcUCACC-CCGc -3'
miRNA:   3'- -GGGGCGcCUG-------GGCGACaAGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 37462 0.66 0.698239
Target:  5'- -gCCGCGG-CCCGCUaccgCGCCgcggCCGg -3'
miRNA:   3'- ggGGCGCCuGGGCGAcaa-GUGGa---GGU- -5'
29416 5' -60.5 NC_006151.1 + 38318 0.68 0.6196
Target:  5'- gCCCGCGGAgCCCGCgcccgGCCUgCCc -3'
miRNA:   3'- gGGGCGCCU-GGGCGacaagUGGA-GGu -5'
29416 5' -60.5 NC_006151.1 + 38720 0.67 0.678731
Target:  5'- gCCCGCuccGGACCCcgcucccgcgcuGCUGUcCuCCUCCu -3'
miRNA:   3'- gGGGCG---CCUGGG------------CGACAaGuGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 39134 0.66 0.713698
Target:  5'- gCCCCGCgcccggccugGGACCCGCgccgcggcgGCCUCUc -3'
miRNA:   3'- -GGGGCG----------CCUGGGCGacaag----UGGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.