miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 39576 0.68 0.629475
Target:  5'- aCCCCGgGGccgAgCCGCUG--CGCCUCUg -3'
miRNA:   3'- -GGGGCgCC---UgGGCGACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 39646 0.67 0.649223
Target:  5'- gCCCCGgacccCGGuCCCGCUGccgccgcgCGCCUaCCGc -3'
miRNA:   3'- -GGGGC-----GCCuGGGCGACaa------GUGGA-GGU- -5'
29416 5' -60.5 NC_006151.1 + 39876 0.67 0.659082
Target:  5'- gCCCCGaGGGCCUGCcggccgaguUGcgCGCCUUCu -3'
miRNA:   3'- -GGGGCgCCUGGGCG---------ACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 40158 0.68 0.580255
Target:  5'- gCCCCGCGG-CCCGCUcGggC-CCaUCAa -3'
miRNA:   3'- -GGGGCGCCuGGGCGA-CaaGuGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 41596 0.66 0.727091
Target:  5'- aUCCGCGGAgCCCGCcccgGccgCGCC-CCGg -3'
miRNA:   3'- gGGGCGCCU-GGGCGa---Caa-GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 45937 0.75 0.25665
Target:  5'- -aCCGCcuGCCCGCUGUgcaaugcccgcgUCACCUCCAu -3'
miRNA:   3'- ggGGCGccUGGGCGACA------------AGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 47087 0.68 0.590055
Target:  5'- gCUCC-CGGcCCCGCac-UCACCUCCGc -3'
miRNA:   3'- -GGGGcGCCuGGGCGacaAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 48574 0.69 0.53189
Target:  5'- aCCCUGCGGccugccGCCCGggGUgCGCCUCg- -3'
miRNA:   3'- -GGGGCGCC------UGGGCgaCAaGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 49284 0.67 0.649223
Target:  5'- gCUCUGCGaGACCCGCcccaagcuggUGUUCAUgCUCUg -3'
miRNA:   3'- -GGGGCGC-CUGGGCG----------ACAAGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 49342 0.68 0.580255
Target:  5'- gCCUGCgcgccGGACCCGCgccgccacaagGUgcUCACCUUCAg -3'
miRNA:   3'- gGGGCG-----CCUGGGCGa----------CA--AGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 51219 0.72 0.393049
Target:  5'- gCCCGCGGGCCCGCgcagGcggCGCgagcgcucggcgcagCUCCAg -3'
miRNA:   3'- gGGGCGCCUGGGCGa---Caa-GUG---------------GAGGU- -5'
29416 5' -60.5 NC_006151.1 + 52378 0.68 0.590055
Target:  5'- cCCCCG-GGGCCCGCgggGgcggcgggCGCCgCCGc -3'
miRNA:   3'- -GGGGCgCCUGGGCGa--Caa------GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 55070 0.68 0.590055
Target:  5'- aCCCgGCGGGCucggCCGCgGcgCGCCUCg- -3'
miRNA:   3'- -GGGgCGCCUG----GGCGaCaaGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 56117 0.68 0.608748
Target:  5'- gCCUCGcCGGGgaggccuUCCGCggGUUCGCCUUCGc -3'
miRNA:   3'- -GGGGC-GCCU-------GGGCGa-CAAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 56234 0.72 0.389803
Target:  5'- gCCCCGaGGACCCGaCggaGUUCGCgCUCUg -3'
miRNA:   3'- -GGGGCgCCUGGGC-Ga--CAAGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 57643 0.72 0.389803
Target:  5'- aCCCCGuuGGCCagcgcgaugaCGCUGUgguaCGCCUCCGg -3'
miRNA:   3'- -GGGGCgcCUGG----------GCGACAa---GUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 60547 0.66 0.728042
Target:  5'- cCCCCGCGGcgaggcgcgcGCCCaggaggccgaagaaGCUGUcCcccgccgcccccgccGCCUCCAc -3'
miRNA:   3'- -GGGGCGCC----------UGGG--------------CGACAaG---------------UGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 60692 0.66 0.698239
Target:  5'- cUCCCGCGcGCCCGCcg--CGCCcgCCGc -3'
miRNA:   3'- -GGGGCGCcUGGGCGacaaGUGGa-GGU- -5'
29416 5' -60.5 NC_006151.1 + 61435 0.68 0.580255
Target:  5'- cCCgCCGCGGcGCCCGCccgcGUcCGCCgCCAu -3'
miRNA:   3'- -GG-GGCGCC-UGGGCGa---CAaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 62518 0.66 0.736567
Target:  5'- gCCCgGCGGuACCUGCaGaagCGCCUgCAc -3'
miRNA:   3'- -GGGgCGCC-UGGGCGaCaa-GUGGAgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.