miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29416 5' -60.5 NC_006151.1 + 141660 0.8 0.127283
Target:  5'- gCCCCGCGGGCUCGUUGUggaggcaugUCuGCCUCCc -3'
miRNA:   3'- -GGGGCGCCUGGGCGACA---------AG-UGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 139011 0.66 0.736567
Target:  5'- cCUCCGCgaGGACCCcaucacGCUGgcaCACCgCCAu -3'
miRNA:   3'- -GGGGCG--CCUGGG------CGACaa-GUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 138495 0.74 0.314535
Target:  5'- uCCUCgGCGGgcGCCCGCUG--CACCUCCu -3'
miRNA:   3'- -GGGG-CGCC--UGGGCGACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 137958 0.7 0.493347
Target:  5'- cCCCCGgGcuucgacGACCCGCgcaacuUUCACUUCCAc -3'
miRNA:   3'- -GGGGCgC-------CUGGGCGac----AAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 136635 0.72 0.397951
Target:  5'- aCCCCGCGGcGCCCGUggGgcgcUCGCC-CCu -3'
miRNA:   3'- -GGGGCGCC-UGGGCGa-Ca---AGUGGaGGu -5'
29416 5' -60.5 NC_006151.1 + 136359 0.7 0.466873
Target:  5'- aCCCCGCGGGgCUGCUcucGUUCGCggcgCUCUc -3'
miRNA:   3'- -GGGGCGCCUgGGCGA---CAAGUG----GAGGu -5'
29416 5' -60.5 NC_006151.1 + 134750 0.69 0.54723
Target:  5'- gCCCCGagcagcgcgcgcgGGGCCCGCgGcUUCGgCUCCAc -3'
miRNA:   3'- -GGGGCg------------CCUGGGCGaC-AAGUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 131982 0.67 0.688507
Target:  5'- -gUCGCGGuACUCGCgcgaGUagGCCUCCAu -3'
miRNA:   3'- ggGGCGCC-UGGGCGa---CAagUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 131782 0.66 0.745958
Target:  5'- -gCCGCGGGCgCCGCcGUcgUCAgcgcgccauCCUCCu -3'
miRNA:   3'- ggGGCGCCUG-GGCGaCA--AGU---------GGAGGu -5'
29416 5' -60.5 NC_006151.1 + 131341 0.68 0.609734
Target:  5'- cCCCCGCGccggccCCCGCUcGUccUCuCCUCCu -3'
miRNA:   3'- -GGGGCGCcu----GGGCGA-CA--AGuGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 131260 0.7 0.512939
Target:  5'- uCCCCGuCGGACCaCGCgccccccUCGCuCUCCu -3'
miRNA:   3'- -GGGGC-GCCUGG-GCGaca----AGUG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 130196 0.68 0.599883
Target:  5'- uCCUCGgGGuGCCCGCUGaggacgcgCAgCUCCGg -3'
miRNA:   3'- -GGGGCgCC-UGGGCGACaa------GUgGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 128603 0.66 0.707919
Target:  5'- gCCCGCGcGccACCCGCggcGUgCGCC-CCAg -3'
miRNA:   3'- gGGGCGC-C--UGGGCGa--CAaGUGGaGGU- -5'
29416 5' -60.5 NC_006151.1 + 128135 0.67 0.649223
Target:  5'- gCUCCGUGGGCCCGCcGUaCGaggCCAg -3'
miRNA:   3'- -GGGGCGCCUGGGCGaCAaGUggaGGU- -5'
29416 5' -60.5 NC_006151.1 + 128097 0.66 0.736567
Target:  5'- gUCCCGCuGGCCCGUcg-UCGCCagCAc -3'
miRNA:   3'- -GGGGCGcCUGGGCGacaAGUGGagGU- -5'
29416 5' -60.5 NC_006151.1 + 127397 0.67 0.675791
Target:  5'- -gCCGCGGccgagucgacgggaGCCCGCggggUCGCCUCg- -3'
miRNA:   3'- ggGGCGCC--------------UGGGCGaca-AGUGGAGgu -5'
29416 5' -60.5 NC_006151.1 + 125586 0.72 0.395495
Target:  5'- gCCCggcgagCGCGGcacgugcuacagccGCCCGCUGgUCACCUUCGa -3'
miRNA:   3'- -GGG------GCGCC--------------UGGGCGACaAGUGGAGGU- -5'
29416 5' -60.5 NC_006151.1 + 125219 0.67 0.66892
Target:  5'- cCCCCGCGGccGCCCGUcGggCccgGCgCUCCc -3'
miRNA:   3'- -GGGGCGCC--UGGGCGaCaaG---UG-GAGGu -5'
29416 5' -60.5 NC_006151.1 + 124933 0.69 0.53189
Target:  5'- aCgUCGCGGGCCC--UGggCGCCUCCu -3'
miRNA:   3'- -GgGGCGCCUGGGcgACaaGUGGAGGu -5'
29416 5' -60.5 NC_006151.1 + 123350 0.72 0.373839
Target:  5'- aCCCCGUGGACgCCGCgc-UC-CUUCCGg -3'
miRNA:   3'- -GGGGCGCCUG-GGCGacaAGuGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.