miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 3' -61.4 NC_006151.1 + 106934 1.13 0.000503
Target:  5'- cGGACCUCAGCUCCUGGGGCGAGCGCCu -3'
miRNA:   3'- -CCUGGAGUCGAGGACCCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 78398 0.77 0.16811
Target:  5'- cGGCCacggCGGCUCUcGGGccGCGAGCGCCg -3'
miRNA:   3'- cCUGGa---GUCGAGGaCCC--CGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 93542 0.75 0.208897
Target:  5'- cGACCaUCAGCgccaugggaaagUCCgccgcgGGGGCGGGCGCg -3'
miRNA:   3'- cCUGG-AGUCG------------AGGa-----CCCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 51382 0.75 0.213922
Target:  5'- uGGAUCgugacgCGGC-CC-GGGGCGAGCGCg -3'
miRNA:   3'- -CCUGGa-----GUCGaGGaCCCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 41489 0.75 0.21905
Target:  5'- cGACCgcgUGGCgcgaggggagCCaaUGGGGCGGGCGCCg -3'
miRNA:   3'- cCUGGa--GUCGa---------GG--ACCCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 4909 0.75 0.224284
Target:  5'- cGGGCCagGGCUCCccgagcGGGGUGAGCagcgGCCc -3'
miRNA:   3'- -CCUGGagUCGAGGa-----CCCCGCUCG----CGG- -5'
29417 3' -61.4 NC_006151.1 + 139201 0.74 0.240622
Target:  5'- gGGGCgCUgGaGCUCCUGGcGGCGAcGCuGCCg -3'
miRNA:   3'- -CCUG-GAgU-CGAGGACC-CCGCU-CG-CGG- -5'
29417 3' -61.4 NC_006151.1 + 20113 0.74 0.252059
Target:  5'- gGGcGCCcCGGCgacggggCUggGGGGCGGGCGCCg -3'
miRNA:   3'- -CC-UGGaGUCGa------GGa-CCCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 120746 0.74 0.263938
Target:  5'- gGGACC-CGGCcgcgucauggCCUGGGuGCG-GCGCCc -3'
miRNA:   3'- -CCUGGaGUCGa---------GGACCC-CGCuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 44829 0.74 0.270047
Target:  5'- aGGGCgUCGGgaCC-GGGGCGAGCGg- -3'
miRNA:   3'- -CCUGgAGUCgaGGaCCCCGCUCGCgg -5'
29417 3' -61.4 NC_006151.1 + 78703 0.73 0.288404
Target:  5'- gGGGCCUCGucgccgcgacggcGC-CCgUGGGGCGcGCGCUg -3'
miRNA:   3'- -CCUGGAGU-------------CGaGG-ACCCCGCuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 134965 0.73 0.288404
Target:  5'- aGGCCUCGGCcagccuccgggccUUCUcGGGCGGGCGCg -3'
miRNA:   3'- cCUGGAGUCG-------------AGGAcCCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 55447 0.73 0.289054
Target:  5'- gGGACCggcgccgcCGGCcCCgccggGGGGCGcGCGCCc -3'
miRNA:   3'- -CCUGGa-------GUCGaGGa----CCCCGCuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 69197 0.73 0.289054
Target:  5'- aGGGgCUC-GCUCC-GGGGCccGCGCCg -3'
miRNA:   3'- -CCUgGAGuCGAGGaCCCCGcuCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 75261 0.73 0.289054
Target:  5'- -cACCUCcgcgGGCUCCUGGcGC-AGCGCCg -3'
miRNA:   3'- ccUGGAG----UCGAGGACCcCGcUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 56547 0.73 0.29562
Target:  5'- cGGGCCcCuGCUcggCCUGccGGGCGAcGCGCCg -3'
miRNA:   3'- -CCUGGaGuCGA---GGAC--CCCGCU-CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 20268 0.73 0.301627
Target:  5'- uGGGCCcCAGCaccauggcuaucuUCCcGGGGCcccGGGCGCCc -3'
miRNA:   3'- -CCUGGaGUCG-------------AGGaCCCCG---CUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 82147 0.72 0.316009
Target:  5'- cGGGCCcggCGGCUCCaGGuccgaGcCGAGCGCCg -3'
miRNA:   3'- -CCUGGa--GUCGAGGaCCc----C-GCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 5013 0.72 0.316009
Target:  5'- gGGGCCgggCgGGCUCC-GGGGCcGGgGCCg -3'
miRNA:   3'- -CCUGGa--G-UCGAGGaCCCCGcUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 139074 0.72 0.323038
Target:  5'- cGAgCUCgGGCUCCgccugGGGGCGcgcauGGCGCUg -3'
miRNA:   3'- cCUgGAG-UCGAGGa----CCCCGC-----UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.