miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 3' -61.4 NC_006151.1 + 649 0.67 0.631324
Target:  5'- cGGCUUCcggGGCgcggCC-GGGGCGGGCuCCg -3'
miRNA:   3'- cCUGGAG---UCGa---GGaCCCCGCUCGcGG- -5'
29417 3' -61.4 NC_006151.1 + 3463 0.68 0.543317
Target:  5'- gGGugCUCGGg-CaUGGGcccgaGCGGGCGCCg -3'
miRNA:   3'- -CCugGAGUCgaGgACCC-----CGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 3965 0.68 0.552948
Target:  5'- cGGGCCgcgCGGCggCCUc-GGCGAGCcgGCCg -3'
miRNA:   3'- -CCUGGa--GUCGa-GGAccCCGCUCG--CGG- -5'
29417 3' -61.4 NC_006151.1 + 4909 0.75 0.224284
Target:  5'- cGGGCCagGGCUCCccgagcGGGGUGAGCagcgGCCc -3'
miRNA:   3'- -CCUGGagUCGAGGa-----CCCCGCUCG----CGG- -5'
29417 3' -61.4 NC_006151.1 + 5013 0.72 0.316009
Target:  5'- gGGGCCgggCgGGCUCC-GGGGCcGGgGCCg -3'
miRNA:   3'- -CCUGGa--G-UCGAGGaCCCCGcUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 5079 0.71 0.375465
Target:  5'- aGGGCCgCGGggCCgc-GGCGGGCGCCg -3'
miRNA:   3'- -CCUGGaGUCgaGGaccCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 5600 0.67 0.582121
Target:  5'- cGACCgCGGUccccUCCggcggagGGGGCGccgccgccgccgGGCGCCg -3'
miRNA:   3'- cCUGGaGUCG----AGGa------CCCCGC------------UCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 5841 0.72 0.337442
Target:  5'- aGGCCggggaGGCUgCggagGGGGaCGAGCGCCc -3'
miRNA:   3'- cCUGGag---UCGAgGa---CCCC-GCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 8130 0.7 0.416279
Target:  5'- cGGACC-CcGC-CCggugggGGGGCGGGUGCa -3'
miRNA:   3'- -CCUGGaGuCGaGGa-----CCCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 8178 0.68 0.556814
Target:  5'- uGGACCUCGGg-CCgggaccccgGGGGCgcuccgggagacgaaGAGgGCCg -3'
miRNA:   3'- -CCUGGAGUCgaGGa--------CCCCG---------------CUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 8247 0.66 0.658937
Target:  5'- aGGGCCgggcCGGCgcgccgggacgccccUCCggGGGaaagaguguccccgcGCGGGCGCCg -3'
miRNA:   3'- -CCUGGa---GUCG---------------AGGa-CCC---------------CGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 9046 0.66 0.690293
Target:  5'- gGGcGCCccgCGuGCUCCgGGGGCGccGGCcgGCCa -3'
miRNA:   3'- -CC-UGGa--GU-CGAGGaCCCCGC--UCG--CGG- -5'
29417 3' -61.4 NC_006151.1 + 10924 0.67 0.59192
Target:  5'- cGGGCCcaCGGCgCC-GaGGGUGGGCGCg -3'
miRNA:   3'- -CCUGGa-GUCGaGGaC-CCCGCUCGCGg -5'
29417 3' -61.4 NC_006151.1 + 13930 0.69 0.468665
Target:  5'- gGGAUCgaacC-CCgGGGGCGGGCGCCc -3'
miRNA:   3'- -CCUGGagucGaGGaCCCCGCUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 17304 0.7 0.424762
Target:  5'- cGGGCUUCgAGCcgUCCgccggGGGGCGccGCGUCa -3'
miRNA:   3'- -CCUGGAG-UCG--AGGa----CCCCGCu-CGCGG- -5'
29417 3' -61.4 NC_006151.1 + 17423 0.66 0.660905
Target:  5'- aGGGCC--AGCgagCCgGGGGCGAucuccgaggaGCGCa -3'
miRNA:   3'- -CCUGGagUCGa--GGaCCCCGCU----------CGCGg -5'
29417 3' -61.4 NC_006151.1 + 17807 0.72 0.344818
Target:  5'- cGGACCcCccCUCCUgggcgcggcGGGGCGGGCgGCCa -3'
miRNA:   3'- -CCUGGaGucGAGGA---------CCCCGCUCG-CGG- -5'
29417 3' -61.4 NC_006151.1 + 19691 0.67 0.621455
Target:  5'- uGGGCCggggguGcCUCCcucagGGaGGCGAGgGCCg -3'
miRNA:   3'- -CCUGGagu---C-GAGGa----CC-CCGCUCgCGG- -5'
29417 3' -61.4 NC_006151.1 + 19871 0.69 0.514779
Target:  5'- gGGGCCUCGGUggagagcgCCaGGGccaGC-AGCGCCa -3'
miRNA:   3'- -CCUGGAGUCGa-------GGaCCC---CGcUCGCGG- -5'
29417 3' -61.4 NC_006151.1 + 20113 0.74 0.252059
Target:  5'- gGGcGCCcCGGCgacggggCUggGGGGCGGGCGCCg -3'
miRNA:   3'- -CC-UGGaGUCGa------GGa-CCCCGCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.