miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 5' -53.3 NC_006151.1 + 106969 1.09 0.005807
Target:  5'- cUCGACGACAACCCCAUCGAGAACGCGu -3'
miRNA:   3'- -AGCUGCUGUUGGGGUAGCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 124446 0.84 0.225047
Target:  5'- gCGACGAgAACCCCGUCGAGGuggaccuGCGCc -3'
miRNA:   3'- aGCUGCUgUUGGGGUAGCUCU-------UGCGc -5'
29417 5' -53.3 NC_006151.1 + 67746 0.81 0.315076
Target:  5'- aCGgcGCGGCGGCCCCGUCG-GggUGCGg -3'
miRNA:   3'- aGC--UGCUGUUGGGGUAGCuCuuGCGC- -5'
29417 5' -53.3 NC_006151.1 + 14151 0.78 0.456271
Target:  5'- cCGACGAgGagccgcGCCCCGcUCGAGGACGCc -3'
miRNA:   3'- aGCUGCUgU------UGGGGU-AGCUCUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 138617 0.78 0.465602
Target:  5'- cUCGGCGAgGACgCCGcCGGGGGCGCGc -3'
miRNA:   3'- -AGCUGCUgUUGgGGUaGCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 133283 0.77 0.484555
Target:  5'- cCGGCGGCGGCCCaCGUCGAGGuucuccccggGgGCGg -3'
miRNA:   3'- aGCUGCUGUUGGG-GUAGCUCU----------UgCGC- -5'
29417 5' -53.3 NC_006151.1 + 82692 0.77 0.50387
Target:  5'- -gGGCGGCGGCCCCcgCGAGGGCcaggaggcccGCGa -3'
miRNA:   3'- agCUGCUGUUGGGGuaGCUCUUG----------CGC- -5'
29417 5' -53.3 NC_006151.1 + 122945 0.76 0.543437
Target:  5'- cCGACGGCGGCgCCGcgGGGGGCGCGg -3'
miRNA:   3'- aGCUGCUGUUGgGGUagCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 97286 0.76 0.572749
Target:  5'- cUCGGCGGCGggcguguugagccGgCCCGUCGGGcAGCGCGc -3'
miRNA:   3'- -AGCUGCUGU-------------UgGGGUAGCUC-UUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 26354 0.75 0.583969
Target:  5'- gCGGCGGCGGgCCgCGUCGGGGcGCGCGu -3'
miRNA:   3'- aGCUGCUGUUgGG-GUAGCUCU-UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 57627 0.75 0.594207
Target:  5'- cUCGACGGCGcgcgagACCCCGUUGGccAGCGCGa -3'
miRNA:   3'- -AGCUGCUGU------UGGGGUAGCUc-UUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 91236 0.75 0.603445
Target:  5'- -aGGCGACGcucggggagccggGCCCCGUCGcgAGGACGCc -3'
miRNA:   3'- agCUGCUGU-------------UGGGGUAGC--UCUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 78552 0.75 0.604473
Target:  5'- cCGACGACGaagcACgCCCGg-GAGGACGCGg -3'
miRNA:   3'- aGCUGCUGU----UG-GGGUagCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 137459 0.75 0.614759
Target:  5'- cCGACGACGGCCUCGagGAG-GCGCc -3'
miRNA:   3'- aGCUGCUGUUGGGGUagCUCuUGCGc -5'
29417 5' -53.3 NC_006151.1 + 90738 0.75 0.614759
Target:  5'- gUGGCGGCGGCgCCC-UCGGGGGCgGCGg -3'
miRNA:   3'- aGCUGCUGUUG-GGGuAGCUCUUG-CGC- -5'
29417 5' -53.3 NC_006151.1 + 63712 0.75 0.625059
Target:  5'- gCGGCGACGugGCgCCCGUCGAaGGCGCc -3'
miRNA:   3'- aGCUGCUGU--UG-GGGUAGCUcUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 51249 0.75 0.635364
Target:  5'- cUCGGCG-CAGCUCCAggUCGAGAagggcaucacgaGCGCGc -3'
miRNA:   3'- -AGCUGCuGUUGGGGU--AGCUCU------------UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 11882 0.74 0.645667
Target:  5'- gCGGCGAUucgGGCCgCAUCGAG-GCGCGu -3'
miRNA:   3'- aGCUGCUG---UUGGgGUAGCUCuUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 129794 0.74 0.666232
Target:  5'- cCGGCGugGGCCCgCAUgaggccCGuGAGCGCGg -3'
miRNA:   3'- aGCUGCugUUGGG-GUA------GCuCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 102783 0.74 0.676476
Target:  5'- gUCGGCGAC-GCCUCcgCGAGuacuuucuGCGCGg -3'
miRNA:   3'- -AGCUGCUGuUGGGGuaGCUCu-------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.